Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18c19
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50705| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.072
SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39)        31   0.51 
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.6  
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            28   3.6  
SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)               28   4.7  
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)                   27   6.3  
SB_8590| Best HMM Match : STAS (HMM E-Value=0.53)                      27   6.3  
SB_47551| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_4360| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_50705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 33.9 bits (74), Expect = 0.072
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 90  ERREAKSDDTV*RQQVHLLGRRASHCLSGRALVFYE--YFRELVDKECSSQASDSFFQVR 263
           E + + S DTV RQQ H +    + C   R +VF +  +  +  + +CS      F Q R
Sbjct: 81  ETQCSDSRDTVFRQQRHSVHTAETQCSDSRDIVFRQQRHSVQTAETQCSDSRDTVFIQQR 140

Query: 264 HKLLRSQSR 290
           H +  ++++
Sbjct: 141 HSVYTAETQ 149



 Score = 30.7 bits (66), Expect = 0.67
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 108 SDDTV*RQQVHLLGRRASHCLSGRALVFYEYFREL--VDKECSSQASDSFFQVRHKLLRS 281
           S DTV RQQ H +    + C   R +VF +    +   + +CS      F Q RH +  +
Sbjct: 153 SRDTVFRQQRHSVQTAETQCSDSRDIVFRQQRHSVHTAETQCSYSRDTVFRQQRHSVQTA 212

Query: 282 QSR 290
           +++
Sbjct: 213 ETQ 215



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 90  ERREAKSDDTV*RQQVHLLGRRASHCLSGRALVFYEYFREL--VDKECSSQASDSFFQVR 263
           E + + S DTV RQQ H +    + C   R  VF +    +   + +CS      F Q R
Sbjct: 59  ETQCSDSRDTVFRQQRHSVQTAETQCSDSRDTVFRQQRHSVHTAETQCSDSRDIVFRQQR 118

Query: 264 HKLLRSQSR 290
           H +  ++++
Sbjct: 119 HSVQTAETQ 127



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 108 SDDTV*RQQVHLLGRRASHCLSGRALVFYEYFREL--VDKECSSQASDSFFQVRHKL 272
           S DTV RQQ H +    + C   R  VF +    +   + +CS      F Q RH +
Sbjct: 197 SRDTVFRQQRHSVQTAETQCSDSRDTVFRQQRHSVHTAETQCSYSRDTVFIQQRHSV 253



 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 90  ERREAKSDDTV*RQQVHLLGRRASHCLSGRALVFYE--YFRELVDKECSSQASDSFFQVR 263
           E + + S DTV  QQ H +    + CL  R  VF +  +  +  + +CS      F Q R
Sbjct: 125 ETQCSDSRDTVFIQQRHSVYTAETQCLYSRDTVFRQQRHSVQTAETQCSDSRDIVFRQQR 184

Query: 264 HKLLRSQSRTGW 299
           H +  ++++  +
Sbjct: 185 HSVHTAETQCSY 196


>SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39)
          Length = 402

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 126 RQQVHLLGRRASHCLSGRALVFYEYFRELVDKECSSQASDSFFQVRHKLLRSQS 287
           R+Q  L+  RAS  L GR++  YE    L  ++CS +A D F      +L S +
Sbjct: 102 REQKRLMVLRASVALHGRSVTLYEKAFPL-SEQCSKKAHDQFLADLASILPSNT 154


>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2396

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 65  VCTTPTNPRAQRSKVRRYSITS-AGPPFRK 151
           V T+  NPR + S VRR +++S A PP +K
Sbjct: 25  VITSRNNPRTRSSGVRRQNLSSLANPPHKK 54


>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 115 SSDFASLRSRIGRCSANHLLPCYSQKTIDH 26
           SSD A L + +  CSA++ +PC  + T+D+
Sbjct: 574 SSDSAFLEALVPLCSASNNVPCDLRNTLDY 603


>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 258 PGKRNLMPGTNTPYPPVPENIRR 190
           PG ++  PG   P PP+PE++R+
Sbjct: 362 PGPQDPGPGNILPRPPIPESLRQ 384


>SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)
          Length = 585

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
 Frame = -1

Query: 366 APLFPVAPIALQRVEVPVIQYNT-NQFSTVTE------EACAAPGKRNLMPGTNTPYPPV 208
           AP   VAP   +  E  +   NT    ST+T       E+ AAPG      GTNTP   +
Sbjct: 262 APEITVAPGTTKASERTITSGNTLGSKSTITPGTTESPESTAAPGTTVSREGTNTPDSLL 321

Query: 207 PE 202
           PE
Sbjct: 322 PE 323


>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
          Length = 470

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +2

Query: 71  TTPTNPRAQRSKVRRYSITSAGPPFRKTGKSLSLWKSS 184
           T P+ PRA     R+YS TS GP   K  K L +  SS
Sbjct: 399 TMPSEPRASPRMQRKYSPTS-GPSSYKQKKHLQVTLSS 435


>SB_8590| Best HMM Match : STAS (HMM E-Value=0.53)
          Length = 158

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 217 IRSVRPRHQIPFSRCGTSFFGHSRELVGIVLDYRNLH 327
           IRS RPR+QI     GT  +   R+  G+  +++ ++
Sbjct: 64  IRSARPRYQILGQVPGTEIYRDIRQFPGLAKEFQRIN 100


>SB_47551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 717

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 346 THSPTTGGGSCNPVQYQPVLDC--DRRSLCRTWKKESDAWDEH 224
           T   T  G   NP Q++P  +    RRSLCR+W      WD H
Sbjct: 614 TQIRTKAGTRKNP-QFEPGFEPWPQRRSLCRSW----GIWDRH 651


>SB_4360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 126 RQQVHLLGRRASHCLSGRALVFYE 197
           R ++HL  R+A     GRALV+YE
Sbjct: 65  RLRLHLTRRKARRSSVGRALVYYE 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,576,809
Number of Sequences: 59808
Number of extensions: 357432
Number of successful extensions: 1084
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)