Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18c14
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   2.4  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    27   4.2  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    26   5.6  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   9.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.7  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 476 AGPIWQILVLNYLWKSRE 423
           +GPIWQ+   N  W+SRE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 756 FAKKYNLGDPIAGNFYEAQYDDYVPI 679
           F K+Y   DP AGN ++A YDD + +
Sbjct: 517 FYKQYKPFDP-AGNKHDANYDDIIEL 541


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 423 FSGLPQIIQDQNLPNRSSRSRVLARLTNSNSF 518
           +S +PQ  Q   +PN +  SR+   L+NS  F
Sbjct: 381 YSDIPQQFQCDYVPNVAKESRINVALSNSFGF 412


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 380 KNNNFVFLLMCPPSDGFLLIVLSLFYTKV*VFYLSIEALRCLPGQLVFYTLIFK 219
           ++N ++     PPS  F L V S+F+    V   S+     L G +VF   IFK
Sbjct: 59  QDNQYIISGYRPPSFSFYLCVKSIFH----VHNESVNIWTHLFGAIVFLFFIFK 108


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +2

Query: 95  VFVWYDTTRIYMHLRNTLIAISYSN---VILHNTVLPNEKLFVTV*KLTYKILADPADIV 265
           +FV +  +    HL+N L     SN   V L   V  N  + +    +  K   +  + +
Sbjct: 86  LFVSWTVSERAEHLKNLLFDAGLSNLPLVELGGNVFFNSHVPLPCSLVLTKSTQENLNRI 145

Query: 266 VPQLISKKPILL 301
            P L+ K+PILL
Sbjct: 146 TPYLVQKRPILL 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,179
Number of Sequences: 5004
Number of extensions: 74067
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)