Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18c09
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    32   0.11 
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    27   3.1  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   5.5  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          26   7.2  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    26   7.2  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   9.5  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = -2

Query: 641  LIASLGIMVVAFLGCGS-ALMENV-TLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQ 468
            L++S+ I++ A   CG  ALM  +  +LY Y+G +    +  ++GA   +      SS+Q
Sbjct: 838  LVSSITIVLKA---CGEEALMRKLGVVLYEYLGEEYPEVLGSILGAIKAIVSVVGMSSMQ 894

Query: 467  PLIRNVIVRL 438
            P IR+++ RL
Sbjct: 895  PPIRDLLPRL 904


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 542 LALFVFGLIGACVVLDFSTYDSSIQ 468
           L +F+F L G+C++  F  Y S+I+
Sbjct: 72  LQIFLFSLFGSCMLFRFIKYPSTIK 96


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 764 VLWLFGVSVFALCLWICFEPGFNEWMRILELQK 666
           V W+ GV++ A  + +    G N+W + L+ +K
Sbjct: 274 VEWVEGVAIMAAIVIVVTVGGVNDWQKELQFKK 306


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 583 ISADPHPRNATTMMPKEAMSIM*IPMKY 666
           +   P P   TT+ P  +MS + IP KY
Sbjct: 229 VKGHPSPATVTTLPPFMSMSTIPIPCKY 256


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 244 PSKYQVISSTQPWKYALPVTESRHSDG 324
           PS++  +S  Q WK   P T +R + G
Sbjct: 440 PSRFDWLSQIQTWKERFPFTFTRSAPG 466


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 256 QVISSTQPWKYALPVTESRHSDGRGLFRLM*SMGPSAPQQPIPSWTILRISLL 414
           Q+  S  PW  A  + +S   +    F    S    AP+  +P W  +R+SLL
Sbjct: 2   QLTGSIYPWFTAYALLKSTLMELINSFIPYKSQTGKAPKCLVPYWLSIRLSLL 54


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 673 SSRILIHSLKPGSKQIQRHSANTDTPNNQ 759
           SS+I  +  KP  + IQRH  +   P++Q
Sbjct: 121 SSKIKSNDNKPAVQSIQRHGPDVAAPSSQ 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,714
Number of Sequences: 5004
Number of extensions: 71683
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)