Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18c09
(804 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 58 7e-09
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 56 4e-08
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 48 1e-05
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 38 0.006
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 38 0.006
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 36 0.026
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 33 0.32
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 32 0.42
U55373-2|AAX88832.1| 349|Caenorhabditis elegans Serpentine rece... 30 1.7
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 29 2.9
U80454-3|AAB37874.1| 216|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z70036-5|CAO78725.1| 712|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical pr... 28 9.0
AC006744-1|AAF60506.2| 328|Caenorhabditis elegans Serpentine re... 28 9.0
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 58.0 bits (134), Expect = 7e-09
Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 6/223 (2%)
Frame = -2
Query: 794 IKYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQKYFIGIYIMLIASLGIMV 615
+KY LF N+VLW+ G+S+ + + + F+ + IL ++ I +++I SL +
Sbjct: 9 VKYLLFLANLVLWVGGLSL--IIVGSILQLKFDNVLDILGDERLATPILLLVIGSL-CTL 65
Query: 614 VAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQPLIRNVIVRLI 435
+ FLGC A+ EN L + LAL + I A V++ ++ +DS + + ++
Sbjct: 66 LGFLGCCGAIRENYCLTVSF-AVLLALLITCEI-AAVIIGYALHDSFRLGIGNQLQTGMV 123
Query: 434 NNPQHDGSREILRMVQEGIGCCGADGPMDYINLNKPLPSECRDSVTGNA------YFHGC 273
+ G + CCG D++ S C + + G A + GC
Sbjct: 124 RYHESRGVESAWDKTHQLFECCGVTNSSDWLTFTTIPDSCCIEEIEGCARENAPLFEPGC 183
Query: 272 VDEMTWYLEGKTGWLAGIVLASCMVSIINAVMSLVLIQAVKKE 144
+ + ++ + GI + ++ + L +++ K+
Sbjct: 184 IHSVEQWVLKNGAMVGGICAVLAAIQLVGVCFACCLSKSILKD 226
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 55.6 bits (128), Expect = 4e-08
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 5/182 (2%)
Frame = -2
Query: 797 CIKYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQKYFIGIYIMLIASLGIM 618
C+KY++F FNV+ +L G + +W E M + Y + +LI
Sbjct: 37 CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLIVGFLTF 96
Query: 617 VVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDF--STYDSSIQPLIRNVIV 444
++ F GC +L EN + L Y + L L + A V D+ I+ L+ +V+V
Sbjct: 97 IIGFSGCVGSLRENTSFLTFY-STLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVV 155
Query: 443 RLINNPQHDGSREILRMVQEGIGCCGADGPMDYINLNKPLPSECRDSVT---GNAYFHGC 273
++P + ++ +QE CCG +G D+ + N E R+ + G F C
Sbjct: 156 GYRDDPD---LQLLIDSMQETWMCCGINGADDW-DRNTYFSIEAREVASPEAGGVPFSCC 211
Query: 272 VD 267
++
Sbjct: 212 IN 213
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 47.6 bits (108), Expect = 1e-05
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 5/160 (3%)
Frame = -2
Query: 803 IYCIKYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQK---YFIGIYIMLIA 633
+ ++ F FN WL GV VF L +W+ F+P +++ + ++G +++
Sbjct: 5 VNALRIVTFLFNFAFWLSGVVVFGLGIWLLFDPAASDFFALHSTHPGAFRYVGWFLVGAG 64
Query: 632 SLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQPLIRN 453
++ I++V + GC A N L + L L F + A V L I+ + +
Sbjct: 65 AI-IILVGYFGCIGAWKMNQCAL-AFFCCILILAFFLELAAAVTLFHK--QEHIKHYVES 120
Query: 452 VIVRLINN--PQHDGSREILRMVQEGIGCCGADGPMDYIN 339
+ I N ++ VQE CCG D+++
Sbjct: 121 SMYDTIRNRYSSETAFKDAFDTVQEKFECCGVKTYTDWLS 160
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = -2
Query: 374 CCGADGPMDYIN-LNKPLPSECRDSVTGNAYFHGCVDEMTWYLEGKTGWLAGIVLASCMV 198
CC G + Y N + ++ GC D + + + G+ + C+V
Sbjct: 203 CCNEHGKLSYPNNCGRSFSQAPLNTYAQFINTRGCADAVYESVSSSLSLIVGVCVVLCIV 262
Query: 197 SIINAVMSLVL 165
++ V+S+ L
Sbjct: 263 QLLGIVLSMTL 273
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Frame = -2
Query: 650 YIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSI 471
Y+ L+ ++V FLG A+ + LL ++ + F+ + + L + S+
Sbjct: 28 YVSLVCGCAQLLVGFLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMGTLSLFYKDKVYSV 87
Query: 470 QPLIRNVIVR----LINNPQHDGSREILRMVQEGIGCCGADGPMDYIN 339
+ +R ++ + + P++ E + +Q CCG+ GP DYI+
Sbjct: 88 KENVREIVKSKYGVMTSEPENKMVTEFIDKLQFYEKCCGSLGPTDYIS 135
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 38.3 bits (85), Expect = 0.006
Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 11/171 (6%)
Frame = -2
Query: 791 KYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWMR----------ILELQKYFIGIYIM 642
KY +F N+V + G + A+ +W+ + F ++ E F YI+
Sbjct: 58 KYGIFTANIVFLIVGGLLLAMGVWLRTDSRFRNFISERYRQAVQEAFWEAPTLFAFSYII 117
Query: 641 LIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGL-IGACVVLDFSTYDSSIQP 465
++ +MVVA LGC + L Y L V L G ++ D +
Sbjct: 118 IVLGAVMMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELSD 177
Query: 464 LIRNVIVRLINNPQHDGSREILRMVQEGIGCCGADGPMDYINLNKPLPSEC 312
+ ++ P +E L +Q CCG G D+ + +P C
Sbjct: 178 ALNYMVQHYYQGP--GVVQESLDHLQTAFRCCGNAGCSDFRVFRQDIPRSC 226
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 36.3 bits (80), Expect = 0.026
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Frame = -2
Query: 797 CIKYTLFCFNVVLWLFGVSVFALCLWICFEPGF----NEWMR---------ILELQKYFI 657
CIK F N + +FG + LW + F ++++R + E+ +Y
Sbjct: 7 CIKLLFFVINFFICIFGALICGFSLWANLDKNFGSHLSDFVRQIEGIDQKLVNEIAEYQA 66
Query: 656 GIYIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACV--VLDFSTY 483
++I++ + +V F GC A E+ LL +I + L L GA V + + +
Sbjct: 67 SLWILVAVGALLFLVGFFGCCGAGCESPVLLGLFIFIIVILTAVEL-GATVFAMTNREEF 125
Query: 482 DSSIQPLIRNVIVRLINNPQHDGSREILRMVQEGIGCCGA 363
SSIQ +++ ++ ++ R+ ++ +Q CCGA
Sbjct: 126 VSSIQQVLKK------SSATYE-LRKNIKPIQNVFQCCGA 158
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 32.7 bits (71), Expect = 0.32
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 30/182 (16%)
Frame = -2
Query: 794 IKYTLFCFNVVLWLFGVSVFALCLWICFEP--------------GFNEWMRILELQKYFI 657
+K++LF FN+V L G+ + LW+ + G+++ + +L
Sbjct: 18 LKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDNLAFATAKVQGYDQDAGLRDLATKPT 77
Query: 656 GI----YIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACV--VLD 495
+ Y++ + ++VVAFLGC A E LL Y S L L + I A + L
Sbjct: 78 AVRQFGYLLFVGGFIVIVVAFLGCCGAAKEWRPLLCCY-SSCLMLILAIQIAATIYAFLH 136
Query: 494 FSTYDSSIQPLIRNVI--------VRLINNPQHDG--SREILRMVQEGIGCCGADGPMDY 345
+++ + ++ + + +++ NNPQ DG + + CCG D +
Sbjct: 137 SHMFENDFRDILHSSLKMYNGTDNMKVSNNPQ-DGLLVKTAWDKIMIEKSCCGVDSKIGE 195
Query: 344 IN 339
N
Sbjct: 196 FN 197
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 32.3 bits (70), Expect = 0.42
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 17/158 (10%)
Frame = -2
Query: 782 LFCFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQK----------------YFIGI 651
LF N+ L G +V AL LWI F+ GF +R L+ +
Sbjct: 12 LFFLNLAQTLVGFTVIALTLWIRFDKGFESEIRTNILRDNDPEPLAGVKSDIRTGIIVSF 71
Query: 650 YIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSI 471
+I++ ++ +++ F+G A++ + LL Y + LF+ + VL S+
Sbjct: 72 WIIIGFAIANVIIGFVGVIGAVIRSKYLLAPYFLFMVILFLLEIAIGITVL---VKRRSV 128
Query: 470 QPLIRNVIVRLIN-NPQHDGSREILRMVQEGIGCCGAD 360
+ ++ + N N Q D S R CCGA+
Sbjct: 129 RRTVKEYVFDSFNMNAQADISAFNFR-----YNCCGAE 161
>U55373-2|AAX88832.1| 349|Caenorhabditis elegans Serpentine
receptor, class h protein76, isoform b protein.
Length = 349
Score = 30.3 bits (65), Expect = 1.7
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Frame = -2
Query: 803 IYCIKYTLF-CFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQK-YFIGIYIMLIAS 630
IY + +F C V LF F ++ F + R +ELQK +FIGI I ++
Sbjct: 213 IYMVSMLIFLCSTFVQLLF--YAFTCLRYLVFSKSSSFSKRTIELQKKFFIGILIQVLVP 270
Query: 629 LGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQPLIRNV 450
+V + C ++ N Y + + + VF G + + ++ R +
Sbjct: 271 YAFIVPSVSYCCYSVYSN---YYNQMLNNFFVLVFNFYGTVSTIGLISCHTAYWKFARKL 327
Query: 449 IV 444
I+
Sbjct: 328 IM 329
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 797 CIKYTLFCFNVVLWLFGVSVFALCLWICF 711
C+ T+FCF + ++ +S F+L L ICF
Sbjct: 215 CLSSTIFCFLSLFSIYCISDFSLELSICF 243
>U80454-3|AAB37874.1| 216|Caenorhabditis elegans Hypothetical
protein T16A1.3 protein.
Length = 216
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 115 FHLYTIASSSSFFTAWIRTKDMTALIIETMQDANTMPASQPV-FPSKYQVISSTQP 279
FH+ T A SS +I T +T +I + AN+ AS+P+ +P+ I P
Sbjct: 19 FHVGTFAKSSQIENKFIPTFAVTLKVIFFLTLANSTMASRPLTYPALVSTIKYLDP 74
>Z70036-5|CAO78725.1| 712|Caenorhabditis elegans Hypothetical
protein T01B4.2c protein.
Length = 712
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 605 LGCGSALMENVTLLYGYIGSQLALFVFGLIG 513
L C + L T++YG IG L LFV + G
Sbjct: 225 LACKTNLGRVATIIYGLIGIPLMLFVLKIFG 255
>Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical
protein T01B4.2b protein.
Length = 733
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 605 LGCGSALMENVTLLYGYIGSQLALFVFGLIG 513
L C + L T++YG IG L LFV + G
Sbjct: 246 LACKTNLGRVATIIYGLIGIPLMLFVLKIFG 276
>Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical
protein T01B4.2a protein.
Length = 757
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 605 LGCGSALMENVTLLYGYIGSQLALFVFGLIG 513
L C + L T++YG IG L LFV + G
Sbjct: 270 LACKTNLGRVATIIYGLIGIPLMLFVLKIFG 300
>AC006744-1|AAF60506.2| 328|Caenorhabditis elegans Serpentine
receptor, class t protein52 protein.
Length = 328
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/93 (23%), Positives = 43/93 (46%)
Frame = -2
Query: 761 LWLFGVSVFALCLWICFEPGFNEWMRILELQKYFIGIYIMLIASLGIMVVAFLGCGSALM 582
L ++G SV A L+ C ++W L Q+ F+G+ I++I + I+ + ++ C A+
Sbjct: 4 LLIYG-SVQANPLYNCSAKPASQWTDELGTQRIFLGV-ILIIFGI-IVEILYVPCLGAIY 60
Query: 581 ENVTLLYGYIGSQLALFVFGLIGACVVLDFSTY 483
+ L + L + ++ C S Y
Sbjct: 61 KKKLLQHSCYKIMFLLGITDMLTTCTATILSGY 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,827,364
Number of Sequences: 27780
Number of extensions: 408765
Number of successful extensions: 1187
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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