Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18c08
(484 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa... 84 1e-17
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 29 0.49
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M... 29 0.49
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.0
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 26 2.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 3.4
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce... 25 4.5
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 4.5
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 4.5
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 4.5
>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
L22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 83.8 bits (198), Expect = 1e-17
Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = -3
Query: 317 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARD-KTKVAITADIPFS 141
K+ ID T D I DV FEKYL + +KV+GKT NL + VVV+R+ +K+A+ A I FS
Sbjct: 11 KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFS 70
Query: 140 XXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNI 27
RDWLRVV++ YELRY+N+
Sbjct: 71 GRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYYNV 108
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 28.7 bits (61), Expect = 0.49
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 147 RNVCGDSDFRLIPGDDNVIA*VICFALNFDVFLQVFLEVTY 269
R + G+S F ++P + IC L V +++F++ T+
Sbjct: 300 RGLVGESSFAVLPNIPPALTFYICLGLQITVLIKLFIKPTW 340
>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 28.7 bits (61), Expect = 0.49
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 333 LDAFAADFATLHSFFASLLVQLGFLS 410
+D + DFAT H+ + + L +GFLS
Sbjct: 87 IDLYILDFATQHNLYVASLRNMGFLS 112
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 3 LRYRWSAFDVEVAQFVSVMSGG 68
LR +W+ F+ EV F V++GG
Sbjct: 598 LRNQWAKFEKEVEDFEKVLTGG 619
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 2.6
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 21 AFDVEVAQFVSVMSGGHHSKPVTQI 95
AF + Q ++++ G H S+ +TQ+
Sbjct: 102 AFKIRYPQRITILRGNHESRQITQV 126
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 3.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -3
Query: 317 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 207
K DC + + ++ + N +K + +HV E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855
>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 4.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 201 SRCRRQG*DESRYHRRHSFFKEVPEVFNKTLPQEEQF 91
SR R + + ++ R SF +VPE + TLP+ F
Sbjct: 135 SRKREKKTEIEKHLERISFLNKVPENWQVTLPETTDF 171
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 250 YFSKLPTSKILSSAGCVQSIVNFKLIFR-LMPLPRILPPFTPFL 378
++ + ++ G +++I ++F L L RI+ PFTPF+
Sbjct: 729 WYIRFNRRRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTPFI 772
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.4 bits (53), Expect = 4.5
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -3
Query: 236 VKVEGKTNNLSNHVVVARDKTKVAITADIP 147
+K+ G NNL++++ + +T++ + DIP
Sbjct: 1210 IKLVGMANNLNDNLELEEFRTRITNSMDIP 1239
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 4.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 272 DVGNFEKYLKEHVKVEGKTNNLSNH 198
+ GN +KY + ++KV GK ++ H
Sbjct: 955 EAGNLKKYDQPNLKVSGKNDSFVTH 979
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,745,727
Number of Sequences: 5004
Number of extensions: 30459
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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