Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18c06
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    30   0.48 
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    28   1.5  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    27   4.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   7.8  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   7.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   7.8  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    26   7.8  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = -3

Query: 577  DYGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYIGHVQIAQVPNRNEPDT 398
            D+    DII  + +  L      F+L+Q    +T  +  L P I H ++ ++  ++E +T
Sbjct: 1382 DHQSFKDIIVHVANLELYYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSE-NT 1440

Query: 397  PGEINYKYVLEHL 359
            P  +N+   ++HL
Sbjct: 1441 PLILNFMVAIQHL 1453


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 647 KRREYPRTNRTNQPVFYAQIFLE*LWKSCGHY*TY*QSKFEIDV 516
           K   Y  + R  Q V    ++   LWK+ GH+  Y ++ F  D+
Sbjct: 326 KYMRYQYSKRGYQEVITPNMYNVNLWKTSGHWNNYSENMFSFDI 369


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 618 SISPWIFSPF-RTSTAYSKFFSNVSQCFGVGFSTLPAIM 731
           ++ P   SP+  +S AY K    +   FG G S  PA+M
Sbjct: 492 TLEPSPVSPYDESSDAYKKLAGAIRYTFGDGTSVTPALM 530


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 787 TNLNTTIEYAKALDAKKIHIMAGKV 713
           T+LNT+I++ + + A  IH+   KV
Sbjct: 179 TDLNTSIKFTENISANAIHVNQDKV 203


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 568 RAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYI 446
           R + I++ I  PN+  ++  FH    + D TH +  LL Y+
Sbjct: 65  RELQIMRAISHPNIIKLIAFFHTHNPSKDETH-LCLLLEYM 104


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 282  IQVKPSFVFPMALYSSPTHSSYPLLAKCSRTY 377
            + +KP ++F + L S  T  S+ L ++C R +
Sbjct: 1259 LYLKPQYLFSVQLASDFTEDSFTLTSECLRYF 1290


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 583 LSDYGRAVD-IIKRIDSPNLRLMLDIFHLQQIAGDITHNI 467
           +SD+   +D  +KRI  P +R  LD  HL+ IA   T  I
Sbjct: 96  MSDFAIGLDPSLKRI-LPEIRFRLDFQHLKSIAKGATSTI 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,571,989
Number of Sequences: 5004
Number of extensions: 77898
Number of successful extensions: 214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)