Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18c06
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0138 - 1069616-1069894,1070056-1070607,1070689-1071046,107...    33   0.29 
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113...    33   0.29 
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    31   1.2  

>12_01_0138 -
           1069616-1069894,1070056-1070607,1070689-1071046,
           1071214-1071503,1072257-1072360,1072419-1072575,
           1073229-1073273,1073636-1073692
          Length = 613

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 829 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 665
           +GV ++P  +     N+  T+EY K+     +     K+E+PT  H+  F KN+L
Sbjct: 271 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 323


>11_01_0137 -
           1137979-1138257,1138419-1138970,1139052-1139409,
           1139577-1139869,1140623-1140675,1140785-1140941,
           1141666-1141683,1141846-1141929,1142005-1142064,
           1142182-1142222,1142316-1142451
          Length = 676

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 829 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 665
           +GV ++P  +     N+  T+EY K+     +     K+E+PT  H+  F KN+L
Sbjct: 334 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 386


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 664  IANFSQTSPNVSELDFPLYQPLCEFFSRPRPSH 762
            ++ +SQTSPN S    P Y P    +S+P PS+
Sbjct: 1766 LSPYSQTSPNYSPTS-PTYSPTSPSYSQPSPSY 1797


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,014,187
Number of Sequences: 37544
Number of extensions: 425096
Number of successful extensions: 1001
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)