Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18c06
(852 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M18635-1|AAA28978.1| 264|Drosophila melanogaster protein ( D.me... 171 8e-43
AY071075-1|AAL48697.1| 264|Drosophila melanogaster RE14575p pro... 171 8e-43
AE014298-1437|AAF46573.1| 264|Drosophila melanogaster CG2227-PA... 171 8e-43
AY119050-1|AAM50910.1| 444|Drosophila melanogaster LP06762p pro... 33 0.50
AE014134-1115|AAF52404.1| 464|Drosophila melanogaster CG9596-PA... 33 0.50
AE014134-1114|AAS64646.1| 444|Drosophila melanogaster CG9596-PB... 33 0.50
>M18635-1|AAA28978.1| 264|Drosophila melanogaster protein (
D.melanogaster transientreceptor potential (trp) locus
gene C, complete cds. ).
Length = 264
Score = 171 bits (417), Expect = 8e-43
Identities = 75/190 (39%), Positives = 124/190 (65%), Gaps = 1/190 (0%)
Frame = -3
Query: 826 GVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHW-ETFEKNLLYAVDV 650
G TSVPG E F++ L+ TI++A+ ++ KIH+ AG + + +T+ NL A D
Sbjct: 75 GSTSVPGSEKLFRSQLDATIDFARQVNCGKIHLTAGLFKGGQESDYTKTYTANLKIAADS 134
Query: 649 LKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHN 470
L+ + G+IEPIN+Y++P Y+++ Y +A I+ + + N++L+ D++HLQ + G+++
Sbjct: 135 LRASKMIGVIEPINKYAVPGYYMNSYSKAAGILADVAADNIQLLADLYHLQHLHGNVSKT 194
Query: 469 ITKLLPYIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAKSGYDEWVGLEYKAIGNTKDGL 290
+ + IGH QIAQVP+R+EPD GE++Y +V + L + GYD W+G EYK T +GL
Sbjct: 195 LEEYKALIGHFQIAQVPHRHEPDVSGELDYGFVFKALQEFGYDGWIGCEYKPKTTTVEGL 254
Query: 289 TWINNYGYSL 260
W++ GY+L
Sbjct: 255 GWVSKLGYTL 264
>AY071075-1|AAL48697.1| 264|Drosophila melanogaster RE14575p
protein.
Length = 264
Score = 171 bits (417), Expect = 8e-43
Identities = 75/190 (39%), Positives = 124/190 (65%), Gaps = 1/190 (0%)
Frame = -3
Query: 826 GVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHW-ETFEKNLLYAVDV 650
G TSVPG E F++ L+ TI++A+ ++ KIH+ AG + + +T+ NL A D
Sbjct: 75 GSTSVPGSEKLFRSQLDATIDFARQVNCGKIHLTAGLFKGGQESDYTKTYTANLKIAADS 134
Query: 649 LKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHN 470
L+ + G+IEPIN+Y++P Y+++ Y +A I+ + + N++L+ D++HLQ + G+++
Sbjct: 135 LRASKMIGVIEPINKYAVPGYYMNSYSKAAGILADVAADNIQLLADLYHLQHLHGNVSKT 194
Query: 469 ITKLLPYIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAKSGYDEWVGLEYKAIGNTKDGL 290
+ + IGH QIAQVP+R+EPD GE++Y +V + L + GYD W+G EYK T +GL
Sbjct: 195 LEEYKALIGHFQIAQVPHRHEPDVSGELDYGFVFKALQEFGYDGWIGCEYKPKTTTVEGL 254
Query: 289 TWINNYGYSL 260
W++ GY+L
Sbjct: 255 GWVSKLGYTL 264
>AE014298-1437|AAF46573.1| 264|Drosophila melanogaster CG2227-PA
protein.
Length = 264
Score = 171 bits (417), Expect = 8e-43
Identities = 75/190 (39%), Positives = 124/190 (65%), Gaps = 1/190 (0%)
Frame = -3
Query: 826 GVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHW-ETFEKNLLYAVDV 650
G TSVPG E F++ L+ TI++A+ ++ KIH+ AG + + +T+ NL A D
Sbjct: 75 GSTSVPGSEKLFRSQLDATIDFARQVNCGKIHLTAGLFKGGQESDYTKTYTANLKIAADS 134
Query: 649 LKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHN 470
L+ + G+IEPIN+Y++P Y+++ Y +A I+ + + N++L+ D++HLQ + G+++
Sbjct: 135 LRASKMIGVIEPINKYAVPGYYMNSYSKAAGILADVAADNIQLLADLYHLQHLHGNVSKT 194
Query: 469 ITKLLPYIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAKSGYDEWVGLEYKAIGNTKDGL 290
+ + IGH QIAQVP+R+EPD GE++Y +V + L + GYD W+G EYK T +GL
Sbjct: 195 LEEYKALIGHFQIAQVPHRHEPDVSGELDYGFVFKALQEFGYDGWIGCEYKPKTTTVEGL 254
Query: 289 TWINNYGYSL 260
W++ GY+L
Sbjct: 255 GWVSKLGYTL 264
>AY119050-1|AAM50910.1| 444|Drosophila melanogaster LP06762p
protein.
Length = 444
Score = 33.1 bits (72), Expect = 0.50
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = -3
Query: 607 QYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIFHLQ---QIAGDITHNITKLLPYIG 443
+YS KY L + + ++ I P +RLMLDIF+ Q ++ G +++++ Y G
Sbjct: 147 EYSQEKYLLKKEKKYFEFVQ-IRQPTIRLMLDIFYRQDSEKVMGIRVDTLSQIISYSG 203
>AE014134-1115|AAF52404.1| 464|Drosophila melanogaster CG9596-PA,
isoform A protein.
Length = 464
Score = 33.1 bits (72), Expect = 0.50
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = -3
Query: 607 QYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIFHLQ---QIAGDITHNITKLLPYIG 443
+YS KY L + + ++ I P +RLMLDIF+ Q ++ G +++++ Y G
Sbjct: 147 EYSQEKYLLKKEKKYFEFVQ-IRQPTIRLMLDIFYRQDSEKVMGIRVDTLSQIISYSG 203
>AE014134-1114|AAS64646.1| 444|Drosophila melanogaster CG9596-PB,
isoform B protein.
Length = 444
Score = 33.1 bits (72), Expect = 0.50
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = -3
Query: 607 QYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIFHLQ---QIAGDITHNITKLLPYIG 443
+YS KY L + + ++ I P +RLMLDIF+ Q ++ G +++++ Y G
Sbjct: 147 EYSQEKYLLKKEKKYFEFVQ-IRQPTIRLMLDIFYRQDSEKVMGIRVDTLSQIISYSG 203
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,289,671
Number of Sequences: 53049
Number of extensions: 766464
Number of successful extensions: 2168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2165
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4085918148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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