Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18c06
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-2|AAB53826.1|  262|Caenorhabditis elegans Hypothetical pr...   145   4e-35
Z81579-8|CAN86617.1|  930|Caenorhabditis elegans Hypothetical pr...    33   0.34 
Z81579-7|CAB61019.1|  927|Caenorhabditis elegans Hypothetical pr...    33   0.34 
AF016852-1|AAB94551.1|  927|Caenorhabditis elegans HMP-1 protein.      33   0.34 
AL132951-6|CAC44308.2|  692|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL023853-1|CAA19558.1|  370|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF016677-3|AAL11110.2|  216|Caenorhabditis elegans Hypothetical ...    28   9.7  
AC024845-4|AAK84623.2|  214|Caenorhabditis elegans Hypothetical ...    28   9.7  

>U00048-2|AAB53826.1|  262|Caenorhabditis elegans Hypothetical
           protein C05D11.5 protein.
          Length = 262

 Score =  145 bits (351), Expect = 4e-35
 Identities = 78/199 (39%), Positives = 118/199 (59%), Gaps = 3/199 (1%)
 Frame = -3

Query: 850 GDTTKGEVGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAG--KVENPTPKHWETFE 677
           G+   G  G+ S+   + EF+ +L+T IEYAKAL   ++H+MAG  K ++      +T+ 
Sbjct: 67  GNWDDGFRGLASLKSAKKEFRKSLDTAIEYAKALGCCRVHVMAGIPKSDDDLENAHQTYS 126

Query: 676 KNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIFHLQ 497
           +N+ +A +  K   +  LIEPIN+Y++P Y L++Y  A+D+I+   S NL++  D FH Q
Sbjct: 127 ENVRFAAEKFKEHKLICLIEPINKYTIPGYHLNNYEDAMDVIQMDQSNNLKIQYDTFHAQ 186

Query: 496 QIAGDITHNITKLLPYIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAKSGYDEWV-GLEY 320
           QI G I   + KL  YIG++Q+AQVPNR   DT GEI+Y ++ + + +S    WV G EY
Sbjct: 187 QINGQIGAIMRKLKDYIGYIQVAQVPNRGACDTRGEIDYHFIFDEI-RSINPSWVIGAEY 245

Query: 319 KAIGNTKDGLTWINNYGYS 263
               + K    WI N   S
Sbjct: 246 L---DAKPSFNWIENMSLS 261


>Z81579-8|CAN86617.1|  930|Caenorhabditis elegans Hypothetical
           protein R13H4.4b protein.
          Length = 930

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -3

Query: 700 PKHWETFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRL 521
           P+H E   +N  Y  D +   +    +E +     PK   S+YGR  D+I  ID+   R+
Sbjct: 227 PEHEEA-RRNRDYTADEM--HSALNALESVLNGQQPKVTFSEYGRIGDLINEIDTFQNRI 283

Query: 520 MLDIFHLQQ 494
            +D  H ++
Sbjct: 284 EIDPAHYRR 292


>Z81579-7|CAB61019.1|  927|Caenorhabditis elegans Hypothetical
           protein R13H4.4a protein.
          Length = 927

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -3

Query: 700 PKHWETFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRL 521
           P+H E   +N  Y  D +   +    +E +     PK   S+YGR  D+I  ID+   R+
Sbjct: 227 PEHEEA-RRNRDYTADEM--HSALNALESVLNGQQPKVTFSEYGRIGDLINEIDTFQNRI 283

Query: 520 MLDIFHLQQ 494
            +D  H ++
Sbjct: 284 EIDPAHYRR 292


>AF016852-1|AAB94551.1|  927|Caenorhabditis elegans HMP-1 protein.
          Length = 927

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -3

Query: 700 PKHWETFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRL 521
           P+H E   +N  Y  D +   +    +E +     PK   S+YGR  D+I  ID+   R+
Sbjct: 227 PEHEEA-RRNRDYTADEM--HSALNALESVLNGQQPKVTFSEYGRIGDLINEIDTFQNRI 283

Query: 520 MLDIFHLQQ 494
            +D  H ++
Sbjct: 284 EIDPAHYRR 292


>AL132951-6|CAC44308.2|  692|Caenorhabditis elegans Hypothetical
           protein Y67H2A.7 protein.
          Length = 692

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 601 SMPKYFLSDYGRAVDIIKRIDSPNLRLMLD 512
           ++ +YF SD G   DII+R D P  +L ++
Sbjct: 501 NLMEYFFSDLGVMTDIIRRTDRPEEQLSIE 530


>AL023853-1|CAA19558.1|  370|Caenorhabditis elegans Hypothetical
           protein Y71A12C.1 protein.
          Length = 370

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 724 AGKVENPTPKHWETFEKNLLYAVDVLKGENIQGLIEPINQYSM 596
           A K++NPT  HW     N +  +D LK  N    I P +Q S+
Sbjct: 133 AKKLQNPTCHHWSLL--NQITTIDFLKKINFPQAINPEDQGSI 173


>AF016677-3|AAL11110.2|  216|Caenorhabditis elegans Hypothetical
           protein ZK1240.9 protein.
          Length = 216

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 784 NLNTTIEYAKALDAKKIHIMAGKVENPTPKH 692
           NLN  +   KA    K+  +A K+E PT KH
Sbjct: 186 NLNLRLYEEKAQALAKLKTIAQKIEKPTKKH 216


>AC024845-4|AAK84623.2|  214|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.7 protein.
          Length = 214

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 22/87 (25%), Positives = 42/87 (48%)
 Frame = +2

Query: 275 IVDPSQTILRVSDGFIFESNPFIVSALSQVF*NVLVVYLSGRVRFVTIRNLSYLHMSNVW 454
           IV+     LRVS  F+F     IV +++Q+   V    ++ R+R       S+++MS  +
Sbjct: 78  IVEYCDLCLRVSMEFMFPVGVLIVFSITQILITV-SPGMASRIRNPIPSLASFIYMSFFF 136

Query: 455 Q*FRNIMSNVASDLLKMKNVQHQSQIW 535
           +   N+++++A  +L       Q   W
Sbjct: 137 KCITNLLTSIA--MLPYLGCTDQPSFW 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,311,471
Number of Sequences: 27780
Number of extensions: 419927
Number of successful extensions: 1117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)