Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18c02
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80836-12|AAB37889.1| 187|Caenorhabditis elegans Dj-1 (mammalia... 157 9e-39
AF016418-9|AAK18904.1| 186|Caenorhabditis elegans Hypothetical ... 118 5e-27
AJ271466-1|CAB69047.1| 341|Caenorhabditis elegans fructose-1,6-... 29 2.3
AC006670-1|AAF39910.1| 341|Caenorhabditis elegans Fructose-1,6-... 29 2.3
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 29 4.0
AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation transp... 29 4.0
AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical... 29 4.0
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 29 4.0
Z92826-1|CAB07320.1| 263|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical pr... 27 9.2
AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical ... 27 9.2
>U80836-12|AAB37889.1| 187|Caenorhabditis elegans Dj-1 (mammalian
transcriptionalregulator) related protein 1.1 protein.
Length = 187
Score = 157 bits (380), Expect = 9e-39
Identities = 86/186 (46%), Positives = 120/186 (64%), Gaps = 1/186 (0%)
Frame = -3
Query: 570 KSALVILA-QGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEAL 394
KSAL+ILA +GAEEME +IT D+L RG + V AGL+G+ PV C+R +VPD L +
Sbjct: 4 KSALIILAAEGAEEMEVIITGDVLARGEIRVVYAGLDGAEPVKCARGAHIVPDVKLED-- 61
Query: 393 AEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXAHGVARGR 214
E +++D VILPGG GS++L++S V +LK ++G +HGV +
Sbjct: 62 VETEKFDIVILPGGQPGSNTLAESLLVRDVLKSQVESGGLIGAICAAPIALLSHGV-KAE 120
Query: 213 RVTSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIELLTGKEKADQV 34
VTS+PS ++KL G Y Y E +RVVV G ++TSRGPGTA+ F L ++ELL GK+KA +
Sbjct: 121 LVTSHPSVKEKLEKGGYKYSE-DRVVVSGKIITSRGPGTAFEFALKIVELLEGKDKATSL 179
Query: 33 EKGMLI 16
ML+
Sbjct: 180 IAPMLL 185
>AF016418-9|AAK18904.1| 186|Caenorhabditis elegans Hypothetical
protein C49G7.11 protein.
Length = 186
Score = 118 bits (283), Expect = 5e-27
Identities = 66/188 (35%), Positives = 110/188 (58%), Gaps = 1/188 (0%)
Frame = -3
Query: 570 KSALVILA-QGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEAL 394
KSAL++L + AEE+E ++T D+L RGG+ V AG + PV C++ +VPD +L +
Sbjct: 5 KSALILLPPEDAEEIEVIVTGDVLVRGGLQVLYAG-SSTEPVKCAKGARIVPDVALKDV- 62
Query: 393 AEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXAHGVARGR 214
+ + +D +I+PGG G L++ +G LLK +G AHG+
Sbjct: 63 -KNKTFDIIIIPGG-PGCSKLAECPVIGELLKTQVKSGGLIGAICAGPTVLLAHGIV-AE 119
Query: 213 RVTSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIELLTGKEKADQV 34
RVT + + +DK++ G Y Y++ + VV+ V+TS+GPGTA+ F L ++E L G EK + +
Sbjct: 120 RVTCHYTVKDKMTEGGYKYLD-DNVVISDRVITSKGPGTAFEFALKIVETLEGPEKTNSL 178
Query: 33 EKGMLISQ 10
K + +++
Sbjct: 179 LKPLCLAK 186
>AJ271466-1|CAB69047.1| 341|Caenorhabditis elegans
fructose-1,6-bisphosphatase protein.
Length = 341
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 576 MSKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLC 442
M KS+ +EE + +I V+ RRG VT L+GSS + C
Sbjct: 89 MLKSSYTTCLLVSEENDELIEVEEQRRGKYIVTFDPLDGSSNIDC 133
>AC006670-1|AAF39910.1| 341|Caenorhabditis elegans
Fructose-1,6-biphosphatase protein1 protein.
Length = 341
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 576 MSKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLC 442
M KS+ +EE + +I V+ RRG VT L+GSS + C
Sbjct: 89 MLKSSYTTCLLVSEENDELIEVEEQRRGKYIVTFDPLDGSSNIDC 133
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -3
Query: 609 LANYRAFKSRTMSKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQV 430
L NY+ + K+ ++ A+ E + I ++ RRG G +PVL V
Sbjct: 770 LKNYKKSDWNLLLKNHNIVFARTNTEQKLEIVQEVQRRGETVAVTGGGVDDTPVLAHANV 829
Query: 429 TLVPDKSLTEALAEKQQYDAVIL 361
+ +S ++ KQ D V+L
Sbjct: 830 GIAMGQSGSD--IAKQTADIVLL 850
>AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1045
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -3
Query: 609 LANYRAFKSRTMSKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQV 430
L NY+ + K+ ++ A+ E + I ++ RRG G +PVL V
Sbjct: 770 LKNYKKSDWNLLLKNHNIVFARTNTEQKLEIVQEVQRRGETVAVTGGGVDDTPVLAHANV 829
Query: 429 TLVPDKSLTEALAEKQQYDAVIL 361
+ +S ++ KQ D V+L
Sbjct: 830 GIAMGQSGSD--IAKQTADIVLL 850
>AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical
protein Y105E8A.12b protein.
Length = 1045
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -3
Query: 609 LANYRAFKSRTMSKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQV 430
L NY+ + K+ ++ A+ E + I ++ RRG G +PVL V
Sbjct: 770 LKNYKKSDWNLLLKNHNIVFARTNTEQKLEIVQEVQRRGETVAVTGGGVDDTPVLAHANV 829
Query: 429 TLVPDKSLTEALAEKQQYDAVIL 361
+ +S ++ KQ D V+L
Sbjct: 830 GIAMGQSGSD--IAKQTADIVLL 850
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -3
Query: 609 LANYRAFKSRTMSKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQV 430
L NY+ + K+ ++ A+ E + I ++ RRG G +PVL V
Sbjct: 770 LKNYKKSDWNLLLKNHNIVFARTNTEQKLEIVQEVQRRGETVAVTGGGVDDTPVLAHANV 829
Query: 429 TLVPDKSLTEALAEKQQYDAVIL 361
+ +S ++ KQ D V+L
Sbjct: 830 GIAMGQSGSD--IAKQTADIVLL 850
>Z92826-1|CAB07320.1| 263|Caenorhabditis elegans Hypothetical
protein C18D11.1 protein.
Length = 263
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 195 WGMTSRAGPSPRRGLQTLW-EQHKWQQ*FSHY 287
+G T P P RG + EQH+ QQ + HY
Sbjct: 224 YGETHAVAPPPHRGATDYYPEQHRPQQQYGHY 255
>Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 81 LTLIELLTGKEKADQVEKGMLISQ 10
L L+EL GK++ D++ K M+ SQ
Sbjct: 288 LILVELWLGKKRQDRIHKDMMASQ 311
>AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 81 LTLIELLTGKEKADQVEKGMLISQ 10
L L+EL GK++ D++ K M+ SQ
Sbjct: 288 LILVELWLGKKRQDRIHKDMMASQ 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,341
Number of Sequences: 27780
Number of extensions: 233245
Number of successful extensions: 601
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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