Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18c01
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.3  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.7  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 248 TRNTLYFNTIYSNYXNHQKYY 186
           +  T++ N  Y+NY N + YY
Sbjct: 308 SNKTIHNNNNYNNYNNKKLYY 328


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 287 N*KYKSHIYSYNSTRNTLYFNTIYSNYXNHQKYY 186
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 287 N*KYKSHIYSYNSTRNTLYFNTIYSNYXNHQKYY 186
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 462 NVLNSLCNFFEMKFHIIKCRFGINQNLYGINNNPKIVLIQFIGKF 596
           NV   +C+ + ++F  +  ++GI QN        +I ++   G F
Sbjct: 48  NVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMF 92


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 266 IYSYNSTRNTLYFNTIYSNYXNH 198
           I + NS  N   +N  Y+NY N+
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNNN 104


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -2

Query: 278 YKSHIYSYNSTRNTLYFNTIYSNYXNHQK--YY 186
           + ++ Y YN   N    N   +NY N+ K  YY
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYY 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,720
Number of Sequences: 438
Number of extensions: 2349
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)