Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18b21
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     27   2.3  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    27   3.1  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   4.0  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    27   4.0  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   5.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   7.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.4  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    25   9.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.4  

>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 659 VSYYSHYLNALLHSIHEDGSVVEGYF--AWSLMDNFEWDDGYVS 534
           +S + H   +LL S  +D  ++       W +  NF  +DGYV+
Sbjct: 63  ISLHVHLAQSLLRSAADDLPLISWLCDTVWKMQGNFTQEDGYVA 106


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +1

Query: 88  KQKESPSPQSKRNCATKS----PETTQRKLTRSNTNQKIRDDYLFSLVFSVKLIRDQ 246
           K K+SP  + KR  +  S    PET  RKL  S + +KI    +  L  + +L   Q
Sbjct: 365 KLKDSPFKKPKRRYSKSSTLVLPETNIRKLANSYSQKKIAGSVIEELTTASELFFKQ 421


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 437 RLPEDYNPDDFSAFNG 390
           RL   YNPDD++AF G
Sbjct: 59  RLDASYNPDDYNAFLG 74


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -2

Query: 560 FEWDDGYVSRFGLYLVDFESPNKTRTAKDSAKL---YSKVIASRRLPEDYNP 414
           FEWD+G  S    + +D  SP      ++ + L   Y+    SR   +D  P
Sbjct: 59  FEWDNGKFSLVDRFTIDGHSPTSLCVLENGSVLTANYNSASISRSKAKDEKP 110


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 113 NPSATAPRSRQRQRKEN*HGRILTRKYETTTYSH 214
           NP  T+ R RQ++ K+N +  +      T T  H
Sbjct: 390 NPDTTSDRCRQQESKDNGNRTVFLGNLHTKTKGH 423


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 97  ESPSPQSKRNCATKSPETTQRKLTRSNTNQ 186
           E P PQS R+    S   TQR L R   N+
Sbjct: 282 EQPQPQSSRSRPRSSTIPTQRTLERLRENR 311


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 626  LHSIHEDGSVVEGYFAWSLMDNFEWDDGYV 537
            L  IHE    +   F+ S    FEW DGY+
Sbjct: 1992 LGDIHEKARKLLAEFSASPAGRFEWFDGYL 2021


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 731 YSGYPIIVTENGYADFNGLDDK 666
           YSG  I +T  GYA    LDDK
Sbjct: 24  YSGLVIGLTAKGYASTTTLDDK 45


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 620  SIHEDGSVVEGYFAWS 573
            S H D SV+E YF+WS
Sbjct: 2921 SFHFDVSVLEQYFSWS 2936


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,452
Number of Sequences: 5004
Number of extensions: 58008
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)