Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18b21
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.9  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 626 LHSIHEDGSVVEGYFAWSLMDNFEWDDG 543
           +HSI +  S+V    A+  +DN  W DG
Sbjct: 20  IHSISD--SLVNAKLAFGFLDNSVWADG 45


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = -2

Query: 590 GYFAWSLMDNFEWDDGYVSRFGLYLVDFESPNKTRTAKDSAKLYSKVIASRRLPED 423
           G+ A  L   F W     S  G +++  E+P      K     YS V   + LP D
Sbjct: 479 GFVAMVLDRLFLWIFTIASIVGTFIILCEAPALRDNTKPIDMEYSSVAQQQFLPHD 534


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 604 EALLKGTSRGV*WTTLNGMTDMCPASVCIWS 512
           + LLK    G   TTLN  T  CP ++ + S
Sbjct: 290 DCLLKKERNGPTQTTLNATTLFCPPNLRLTS 320


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 604 EALLKGTSRGV*WTTLNGMTDMCPASVCIWS 512
           + LLK    G   TTLN  T  CP ++ + S
Sbjct: 380 DCLLKKERNGPTQTTLNATTLFCPPNLRLTS 410


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 85  QKQKESPSPQSKRNCATKSPETTQRK 162
           +K K+S SP   ++     P+TTQR+
Sbjct: 542 KKTKQSLSPSENQSKMEILPKTTQRQ 567


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 24  WFWGFTIFSFLGLV 65
           WF G TIF F  +V
Sbjct: 297 WFLGCTIFLFAAMV 310


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = -2

Query: 587 YFAWSLMDNFEWDDGYVSRFGLYLVDFESPNKTRTAKDSAKLYSKVIASRRLPEDYNPDD 408
           Y A  L   F W        G  L+  ++P+   T K     YSK+   + +  +  P++
Sbjct: 541 YVAMVLDRIFLWIFTVACVLGTVLIILQAPSLYDTTKPIDIKYSKIAKKKMMLMNMGPEE 600



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 24  WFWGFTIFSFLGLVFMVMMLP 86
           + W FT+   LG V +++  P
Sbjct: 550 FLWIFTVACVLGTVLIILQAP 570


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,681
Number of Sequences: 438
Number of extensions: 4097
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)