Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18b14
(255 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch... 46 1e-06
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 1.6
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 25 1.6
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family... 25 2.1
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 25 2.1
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ... 24 2.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 24 3.7
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 24 3.7
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 4.9
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 23 6.4
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 23 6.4
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 23 8.5
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 23 8.5
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo... 23 8.5
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 23 8.5
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 23 8.5
>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 77
Score = 45.6 bits (103), Expect = 1e-06
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -1
Query: 138 DDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRDC 7
+ D + L+K GC+E H ++ +C +T DWRKC + FR C
Sbjct: 14 EKDVWDTALEKGGCVEEHLRLNDCYWDTHDWRKCTEQMEEFRKC 57
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 1.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 152 NRSAVMMIPWKAC*KKLAVWNYTIK 78
N A+ I WK K + WNY K
Sbjct: 169 NSDAIKSIAWKEKDKSIKTWNYQPK 193
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 1.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 89 SSRQPVFFSMPSTGSSSLPICSRGFIVIFSYEI 187
S+ QP+ F++P+T S P I FS I
Sbjct: 219 SAAQPIIFNLPATVEMSTPNTYADLIEYFSTNI 251
>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 24.6 bits (51), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 42 FSSLSFRRCIPALYSVVPDSQFFSACLPRD 131
FS+ F + I Y V P+S+FF+ RD
Sbjct: 214 FSTWFFWQLIKGRYEVAPESKFFNYVDVRD 243
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 2.1
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 104 LAVW---NYTIKCRNASPKRKTGESVKPQLIISEIVS 3
+ VW NY +C N + K ES++P+ I V+
Sbjct: 252 VTVWSAPNYCYRCGNVASVMKVDESLEPEFRIFSAVA 288
>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 24.2 bits (50), Expect = 2.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 99 CLELHYKVQECIAETKDWRKCQTAV 25
C EL VQE + ++K++ +C T V
Sbjct: 177 CRELTITVQEALEKSKEFIRCWTNV 201
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 23.8 bits (49), Expect = 3.7
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 168 TIKPREQIGSDDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRD 10
T+K Q S +D E ++ C E+ V++ KD K T+ NN +
Sbjct: 245 TLKSSGQYVSKEDITELFAEQVKCSEIAQVVRDEQDTAKDPVKALTSTNNVEE 297
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 23.8 bits (49), Expect = 3.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 95 WNYTIKCRNASPKRKTGESVKP 30
WNY I+C+ P RKT + P
Sbjct: 750 WNYLIQCK--KPARKTPLLIPP 769
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 23.4 bits (48), Expect = 4.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 192 KRISYENMTIKPREQIGSDDDPVEGMLKKTGCLELHYKVQEC 67
K +++EN++ R+Q+ S V G ++ G EL + C
Sbjct: 1018 KLLTHENISASHRQQLQSAVRNVLGTMEDRGSSELKKLAEVC 1059
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 23.0 bits (47), Expect = 6.4
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -1
Query: 216 KKKL-ILPLKRISYENMTIKPREQIG 142
KK+L IL +++I Y MT+ P QIG
Sbjct: 904 KKELSILEMEKIWYVIMTLNPVFQIG 929
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 23.0 bits (47), Expect = 6.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 30 RFDTFSSLSFRRCIPALYSVVPDSQ 104
RF ++ CIP L SVV SQ
Sbjct: 274 RFQALHRINMIECIPELQSVVCASQ 298
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 22.6 bits (46), Expect = 8.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 2 LIQSLKLLTAV*HFLQSFVSAMH 70
L S LL A+ H+++S SAMH
Sbjct: 1267 LYHSHGLLPAILHYIESNNSAMH 1289
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 22.6 bits (46), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 68 ASPKRKTGESVKPQLIISE 12
A K K GE+V P ++SE
Sbjct: 444 ADDKSKVGEAVLPGFVVSE 462
>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 22.6 bits (46), Expect = 8.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -2
Query: 95 WNYTIKCRNASPKRKTGE 42
WN+ I C N K++ G+
Sbjct: 25 WNHDITCLNFKVKKRRGD 42
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 22.6 bits (46), Expect = 8.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 177 ENMTIKPREQIGSDD 133
E+++IKP E GSDD
Sbjct: 249 ESLSIKPFEYSGSDD 263
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 22.6 bits (46), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 138 DDDPVEGMLKKTGCLELHYKVQE 70
DD+ +G+ KT LEL Y++ E
Sbjct: 302 DDESDDGLDDKTELLELDYQLGE 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,083,074
Number of Sequences: 5004
Number of extensions: 19851
Number of successful extensions: 60
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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