Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18b14
(255 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 33 0.032
02_05_0389 + 28551649-28551903,28552328-28552402,28552482-285526... 29 0.39
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 28 0.90
02_04_0278 - 21507288-21507726,21507893-21507972,21508587-215088... 27 1.6
02_05_0390 + 28557722-28557937,28558440-28558514,28558597-285587... 27 2.1
03_01_0264 - 2043334-2043344,2043441-2043801,2044666-2044974 27 2.8
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696... 27 2.8
02_03_0056 - 14525491-14525833,14525882-14526125,14526447-145265... 26 3.6
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706... 26 4.8
07_03_0843 - 21962223-21963815,21963957-21964607 25 6.4
08_02_0624 - 19434168-19435352 25 8.4
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16... 25 8.4
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 33.1 bits (72), Expect = 0.032
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 111 KKTGCLELHYKVQECIAETK-DWRKCQTAVNNFRDCIN 1
K C + + V +C+ TK D++KC+T ++ + +C N
Sbjct: 69 KDDPCCDTYSLVMKCLENTKNDFKKCKTLIDKYEECSN 106
>02_05_0389 +
28551649-28551903,28552328-28552402,28552482-28552605,
28552692-28552978,28553147-28553482,28553813-28553869,
28554156-28554382,28554465-28554627,28554912-28554938
Length = 516
Score = 29.5 bits (63), Expect = 0.39
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Frame = -1
Query: 216 KKKLILPLKRISYENMTIKPREQIGSDDD------PVEGMLKKTGCLELHYKVQECIAET 55
K +++ L R+S +M + PR Q+ S + P E +LK+ ++ +QE + ++
Sbjct: 354 KIRILKGLTRMS--SMRVGPRPQVVSPERQKLYSIPEEQLLKEKREIDELINIQEALRDS 411
Query: 54 KDWRKCQTAVNNFRDC 7
K +C+ A++ C
Sbjct: 412 KQCPRCKMAISKIEGC 427
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 28.3 bits (60), Expect = 0.90
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 60 RRCIPALYSVVPDSQFFSA 116
+RCIP LYS+VP F A
Sbjct: 436 KRCIPRLYSIVPMEHAFKA 454
>02_04_0278 -
21507288-21507726,21507893-21507972,21508587-21508840,
21508988-21509180
Length = 321
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 101 PVFFSMPSTGSSSLPICSRGFIV 169
P+F S TGS++ +C+RGF V
Sbjct: 56 PLFVSSAETGSANSEMCTRGFDV 78
>02_05_0390 +
28557722-28557937,28558440-28558514,28558597-28558766,
28559046-28559124,28559320-28559516,28560300-28560387,
28560453-28560679,28560763-28560919,28561467-28561517
Length = 419
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 129 PVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRDC 7
P E +LK+ LE +QE + +K C+ A++ C
Sbjct: 284 PAEQLLKERRELEELMNIQEALRSSKQCPHCKMAISKIEGC 324
>03_01_0264 - 2043334-2043344,2043441-2043801,2044666-2044974
Length = 226
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 101 PVFFSMPSTGSSSLPICSRGFIVIFSY 181
PV F PS+ S + C G +++F+Y
Sbjct: 157 PVTFEAPSSSSLGIQSCVYGALMVFTY 183
>01_06_0357 -
28668894-28669238,28669510-28669537,28669578-28669635,
28669836-28669916,28670395-28670526,28670609-28670926,
28672495-28673317
Length = 594
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 105 FFSACLPRDHHHCRSVLEV 161
FFS+C DHH+ + +EV
Sbjct: 292 FFSSCSSEDHHNSQGAVEV 310
>02_03_0056 -
14525491-14525833,14525882-14526125,14526447-14526591,
14526757-14527121,14527323-14527722
Length = 498
Score = 26.2 bits (55), Expect = 3.6
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -1
Query: 93 ELHYKVQECIAETKDWRK 40
E+HY + E IA+T++W++
Sbjct: 446 EIHYNLTEHIAQTQEWQQ 463
>05_06_0206 +
26369089-26369143,26369627-26369733,26369814-26370647,
26370781-26370939,26371070-26371410,26373894-26373991,
26374244-26374350,26374715-26375266,26375366-26375524,
26375631-26376005
Length = 928
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 183 SYENMTIKPREQIGSDDDPVEGMLKKTG 100
S E +T PR Q+ + D V + K+TG
Sbjct: 3 SVERITSMPRRQVQARDGSVASLAKRTG 30
>07_03_0843 - 21962223-21963815,21963957-21964607
Length = 747
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 198 PLKRISYENMTIKP 157
PL+R+SY NMTI P
Sbjct: 517 PLQRVSYLNMTIYP 530
>08_02_0624 - 19434168-19435352
Length = 394
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = +3
Query: 66 CIPALYSVVPDSQFFSACLPRDHHHCRSVLEVL*SYFRMKYVLVAIL 206
C AL+ + + + D HHC + E+ Y VL A++
Sbjct: 316 CEDALWETIDVANAAATLRLADRHHCPQLKELCMEYIASAGVLAAVM 362
>05_01_0024 -
164618-165139,166884-166949,167046-167216,167321-167422,
167538-167600,167679-167825,168234-168359,168742-168921,
169183-169322,169688-169861,170096-170123
Length = 572
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -1
Query: 105 TGCLELHYKVQEC-IAETKDWRKCQTAVNNFRDCI 4
T C E ++C ++ +D KC AV F C+
Sbjct: 525 TPCTEERSNCRQCYVSNAQDPLKCAEAVKRFEACV 559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,650,905
Number of Sequences: 37544
Number of extensions: 118555
Number of successful extensions: 300
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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