Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18b14
         (255 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC106036-1|AAI06037.1|   87|Homo sapiens coiled-coil-helix-coile...    59   2e-09
AF242180-1|AAF60345.1|   96|Homo sapiens E2IG2 protein.                59   2e-09

>BC106036-1|AAI06037.1|   87|Homo sapiens
           coiled-coil-helix-coiled-coil-helix domain containing 8
           protein.
          Length = 87

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 19/46 (41%), Positives = 35/46 (76%)
 Frame = -1

Query: 138 DDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRDCIN 1
           ++DP++ ++ ++GC   H+ VQEC+A+ +DWR+CQ  V  F+DC++
Sbjct: 21  EEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMS 66


>AF242180-1|AAF60345.1|   96|Homo sapiens E2IG2 protein.
          Length = 96

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 19/46 (41%), Positives = 35/46 (76%)
 Frame = -1

Query: 138 DDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRDCIN 1
           ++DP++ ++ ++GC   H+ VQEC+A+ +DWR+CQ  V  F+DC++
Sbjct: 30  EEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMS 75


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,935,824
Number of Sequences: 237096
Number of extensions: 651259
Number of successful extensions: 1190
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 76,859,062
effective HSP length: 62
effective length of database: 62,159,110
effective search space used: 1367500420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)