Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18b14
         (255 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094788-1|AAM11141.1| 1521|Drosophila melanogaster LD15253p pro...    26   8.0  
AF221715-1|AAF34661.1| 5554|Drosophila melanogaster split ends l...    26   8.0  
AF188205-1|AAF13218.1| 5533|Drosophila melanogaster Spen RNP mot...    26   8.0  
AF184612-1|AAF26299.1| 5476|Drosophila melanogaster split ends p...    26   8.0  
AE014134-58|AAN10511.1| 5476|Drosophila melanogaster CG18497-PC,...    26   8.0  
AE014134-57|AAF51534.2| 5533|Drosophila melanogaster CG18497-PB,...    26   8.0  
AE014134-56|AAF51535.2| 5560|Drosophila melanogaster CG18497-PA,...    26   8.0  

>AY094788-1|AAM11141.1| 1521|Drosophila melanogaster LD15253p
           protein.
          Length = 1521

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 50  SFVSAMHSCTL*CSSRQPVFFSMP---STGSSSLPI 148
           S  SA+ SC +  S   P   SMP   S+ SSSLP+
Sbjct: 419 SLASAVVSCNVNASGTVPASTSMPSGVSSSSSSLPM 454


>AF221715-1|AAF34661.1| 5554|Drosophila melanogaster split ends long
            isoform protein.
          Length = 5554

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 50   SFVSAMHSCTL*CSSRQPVFFSMP---STGSSSLPI 148
            S  SA+ SC +  S   P   SMP   S+ SSSLP+
Sbjct: 897  SLASAVVSCNVNASGTVPASTSMPSGVSSSSSSLPM 932


>AF188205-1|AAF13218.1| 5533|Drosophila melanogaster Spen RNP motif
            protein long isoformprotein.
          Length = 5533

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 50   SFVSAMHSCTL*CSSRQPVFFSMP---STGSSSLPI 148
            S  SA+ SC +  S   P   SMP   S+ SSSLP+
Sbjct: 903  SLASAVVSCNVNASGTVPASTSMPSGVSSSSSSLPM 938


>AF184612-1|AAF26299.1| 5476|Drosophila melanogaster split ends
           protein.
          Length = 5476

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 50  SFVSAMHSCTL*CSSRQPVFFSMP---STGSSSLPI 148
           S  SA+ SC +  S   P   SMP   S+ SSSLP+
Sbjct: 846 SLASAVVSCNVNASGTVPASTSMPSGVSSSSSSLPM 881


>AE014134-58|AAN10511.1| 5476|Drosophila melanogaster CG18497-PC,
           isoform C protein.
          Length = 5476

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 50  SFVSAMHSCTL*CSSRQPVFFSMP---STGSSSLPI 148
           S  SA+ SC +  S   P   SMP   S+ SSSLP+
Sbjct: 846 SLASAVVSCNVNASGTVPASTSMPSGVSSSSSSLPM 881


>AE014134-57|AAF51534.2| 5533|Drosophila melanogaster CG18497-PB,
            isoform B protein.
          Length = 5533

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 50   SFVSAMHSCTL*CSSRQPVFFSMP---STGSSSLPI 148
            S  SA+ SC +  S   P   SMP   S+ SSSLP+
Sbjct: 903  SLASAVVSCNVNASGTVPASTSMPSGVSSSSSSLPM 938


>AE014134-56|AAF51535.2| 5560|Drosophila melanogaster CG18497-PA,
            isoform A protein.
          Length = 5560

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 50   SFVSAMHSCTL*CSSRQPVFFSMP---STGSSSLPI 148
            S  SA+ SC +  S   P   SMP   S+ SSSLP+
Sbjct: 903  SLASAVVSCNVNASGTVPASTSMPSGVSSSSSSLPM 938


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,425,599
Number of Sequences: 53049
Number of extensions: 204447
Number of successful extensions: 464
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 24,988,368
effective HSP length: 64
effective length of database: 21,593,232
effective search space used: 431864640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)