Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18b07
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    29   0.83 
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    27   3.4  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    27   4.4  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   7.8  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   7.8  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   7.8  

>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 173 ICYSCYINRIVQGNCAAGFTSQRQLHAHTRRTAGRP 280
           +C SCY  R       +   ++R+ HA TR+T  +P
Sbjct: 221 VCDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKP 256


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 622 FYNFTPKDMGALPDELSFNMINE 554
           FY + P++   LPD LSF  I E
Sbjct: 581 FYGWKPENSCTLPDHLSFQRIQE 603


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +2

Query: 461 LSAFHHEIRSEIAC--CYTTVLIQTCVQVLYRC-FVYHIKR*FIRKSTHILWSKVVEFVC 631
           ++  HH     +A    Y    +QT VQ  Y   F ++    F+  STH L+   +    
Sbjct: 158 MAHIHHTYEFLLAYPNAYIAAALQTVVQFSYTTVFGWYTTHLFL--STHSLFPSFLVHAF 215

Query: 632 CNSLFAAGLRGVVG 673
           CNS+    L G +G
Sbjct: 216 CNSMGLPTLYGKIG 229


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -2

Query: 739 CGFEASEWFSRFLDSSAANYRLAYYASQSCREQRVTANKFYNFTPKDMGALPDELSFNMI 560
           CG+EA+E+     D    N  L    +Q  R  +     F+    KD+G++ D  S   +
Sbjct: 550 CGYEAAEFVHVMGDCHIYNDHLEALQTQLERVPKAFPKLFFKRDAKDIGSI-DSFS---V 605

Query: 559 NEASVEDLN 533
           ++ +VE  N
Sbjct: 606 DDFAVEGYN 614


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 457 YAEDGWKFVKIGENVFEVIKPCTRCVMTTVDPETGVR 347
           Y E+G  +  + +N F   KP T   + T  P  G R
Sbjct: 102 YIENGGLYAFVFDNTFSKTKPKTVTFLLTAQPYNGPR 138


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 628 NKFYNFTPKDMGALPDELSFNM 563
           N  ++FT +D+ AL DELS N+
Sbjct: 345 NNPFSFTSQDVEALKDELSSNL 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,181
Number of Sequences: 5004
Number of extensions: 62384
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)