Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18b07
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0275 + 21976990-21977140,21977239-21977388,21977775-219779... 87 2e-17
09_06_0276 + 21980147-21980285,21980369-21980550,21980867-219811... 83 4e-16
06_03_1072 + 27365834-27365945,27366360-27366464,27366844-273669... 81 1e-15
05_04_0252 - 19386942-19387048,19388332-19388947 31 1.5
03_06_0490 + 34289904-34289967,34291912-34292237,34292401-342925... 29 3.5
02_02_0149 - 7182562-7182891,7182989-7183575,7185334-7185433,718... 29 3.5
04_04_0891 + 29130494-29130904,29131043-29131102,29131203-291314... 29 4.7
07_03_0109 + 13502604-13503059,13503729-13504682 28 8.2
>09_06_0275 +
21976990-21977140,21977239-21977388,21977775-21977951,
21978073-21978161,21978259-21978323,21978445-21978547,
21979042-21979152,21979306-21979374,21979558-21979614
Length = 323
Score = 87.0 bits (206), Expect = 2e-17
Identities = 61/176 (34%), Positives = 89/176 (50%)
Frame = -2
Query: 832 MEPLHVNLAEXAALQKSKTAYVWGVPVPVYDCGFEASEWFSRFLDSSAANYRLAYYASQS 653
M+PL + L+ A+ + + W YD G EA+EWFS + + + RL + S
Sbjct: 107 MDPLKIPLSAEQAIINDVSVWEWSGSA--YDEGAEAAEWFSSYFGNPS---RLVRFKEGS 161
Query: 652 CREQRVTANKFYNFTPKDMGALPDELSFNMINEASVEDLNTRLNENCRVTTRNFRPNFVV 473
E R T N Y K M D F M ++ S++ LN L E V FRPN +V
Sbjct: 162 --EIRPT-NPDYAQGYKIM--FTDCFPFLMASQGSLDALNEVLKEP--VPMNRFRPNILV 214
Query: 472 EGAEPYAEDGWKFVKIGENVFEVIKPCTRCVMTTVDPETGVRNSASEPLNTLKKYR 305
+G PY+ED WK +KI + F+ +K C RC + T++ E G+ +EP TL +R
Sbjct: 215 DGCHPYSEDLWKTIKINKLTFQGVKLCNRCKVPTINQENGI--LGTEPTETLLTFR 268
>09_06_0276 +
21980147-21980285,21980369-21980550,21980867-21981137,
21981263-21981351,21981474-21981538,21981656-21981758,
21982215-21982325,21982441-21982509,21982553-21982687
Length = 387
Score = 82.6 bits (195), Expect = 4e-16
Identities = 59/176 (33%), Positives = 86/176 (48%)
Frame = -2
Query: 832 MEPLHVNLAEXAALQKSKTAYVWGVPVPVYDCGFEASEWFSRFLDSSAANYRLAYYASQS 653
++PL + L A + + W YD G EA+EWFS + RL + S
Sbjct: 145 LDPLKIPLGAKRATVDDVSIWEWSGSA--YDEGDEAAEWFSSYFGKPT---RLVRFNEAS 199
Query: 652 CREQRVTANKFYNFTPKDMGALPDELSFNMINEASVEDLNTRLNENCRVTTRNFRPNFVV 473
E R T N Y K + A D+ F + ++ SV+ LN+ L E V FRPN +V
Sbjct: 200 --EIRET-NPDYAQGYKVLFA--DDFPFLLASQGSVDALNSILKEP--VPMNRFRPNIIV 252
Query: 472 EGAEPYAEDGWKFVKIGENVFEVIKPCTRCVMTTVDPETGVRNSASEPLNTLKKYR 305
+G PY+ED WK +KIG+ F +K C RC + T++ + G+ EP L+ R
Sbjct: 253 DGCHPYSEDLWKTIKIGKLTFLGVKLCDRCKVPTINQDNGI--PGEEPTEALQALR 306
>06_03_1072 + 27365834-27365945,27366360-27366464,27366844-27366929,
27367445-27367631,27368031-27368142,27368235-27368337,
27368424-27368469,27368670-27368708,27368803-27368959,
27369031-27369133,27369337-27369453,27369880-27369957,
27370044-27370145,27370252-27370345,27370432-27370542,
27370643-27370707,27370949-27371097,27371349-27371581,
27371778-27371908,27372016-27372126,27372210-27372326
Length = 785
Score = 81.0 bits (191), Expect = 1e-15
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 14/190 (7%)
Frame = -2
Query: 829 EPLHVNLAEXAALQKSKTAYVWGVPVPVYDCGFEASEWFSRFLDS-------SAANYRLA 671
+ L ++L E A S+ V+G V + WFS + S++ YR
Sbjct: 566 DKLQLSLLESLA-DLSEEVDVFGQRYEVQSYDDRVNTWFSEAIGRPCTLVRCSSSKYRSC 624
Query: 670 YYASQSCREQRVTANKFYNFTPKDMGALPDELSFNMINEASVEDLNTRLNE---NCR--- 509
Y R R T +K NF +E +I+E S+ DLN+RLN +C+
Sbjct: 625 TYTGLRDRPCRDTQSKL-NFV--------NEGQLLLISEESISDLNSRLNSGKGDCKQKL 675
Query: 508 -VTTRNFRPNFVVEGAEPYAEDGWKFVKIGENVFEVIKPCTRCVMTTVDPETGVRNSASE 332
V FRPN V+ G+ PY+ED WK ++IGE F + C RC M + ++G + E
Sbjct: 676 PVDAMRFRPNLVISGSSPYSEDNWKKLRIGEACFTSMGGCNRCQMINLHQDSGQVLKSKE 735
Query: 331 PLNTLKKYRQ 302
PL TL YR+
Sbjct: 736 PLATLASYRR 745
>05_04_0252 - 19386942-19387048,19388332-19388947
Length = 240
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 323 IQWFRSRIANASFWID--CGHHASRARLYNFEHVFADLH 433
I WFR A A+ ID CGH A +E VFA LH
Sbjct: 38 IGWFRGEFAAANAVIDALCGHLAQIGGDAEYEAVFAALH 76
>03_06_0490 +
34289904-34289967,34291912-34292237,34292401-34292536,
34292651-34292793,34292880-34293003,34293562-34293963,
34294121-34294176
Length = 416
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 511 RVTTRNFRPNFVV-EGAEPYAEDGWKFVKIGENVFEVIKPCT 389
R+ TRNFRP+ V+ EG GW I EN KP T
Sbjct: 72 RIATRNFRPDSVLGEGGFGSVYKGW----IDENTLSACKPGT 109
>02_02_0149 -
7182562-7182891,7182989-7183575,7185334-7185433,
7185547-7185563,7185928-7186369,7186501-7186629
Length = 534
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 695 FGRELSAGLLRLAILPRTESYSKQILQLYSKGYGCSSG 582
+GR LS ++ I+P Y K++ ++ G GC +G
Sbjct: 199 YGRHLSKDVVDKEIVPDMARYLKEMKAMFKLGIGCRNG 236
>04_04_0891 +
29130494-29130904,29131043-29131102,29131203-29131409,
29131520-29131645,29131767-29131823,29131946-29132014
Length = 309
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 326 QWFRSRIANASFW-IDCGHHASRARLYNFEHVFADLHEFPSVFSVRLSAFHHEI 484
QW + +AS W + HH +R + VFA + P++ + FH I
Sbjct: 165 QWAHRSLWHASLWHMHESHHRAREGPFELNDVFAITNAVPAISLLAYGFFHRGI 218
>07_03_0109 + 13502604-13503059,13503729-13504682
Length = 469
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = -2
Query: 625 KFYNFTPKDMGALPDELSFNMINEASVEDLNTRLNENCRVTTRNFRPN 482
K+++F PK++ AL + ++ + +L T + CR + + P+
Sbjct: 253 KYFSFGPKEISALRSLIPAHLTRSTTAFELLTAVMWRCRTSALGYEPD 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,010,737
Number of Sequences: 37544
Number of extensions: 378140
Number of successful extensions: 997
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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