Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18b06
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   4.3  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    27   4.3  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   5.7  
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    26   5.7  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    26   7.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.9  

>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 187 LFLSLRPYKLFDILTSSMDLKLPFYYYYSI 276
           L L  +  ++F++    +D K P+YY+Y +
Sbjct: 457 LDLEKQVLRIFNVQIEELDAKTPWYYHYEL 486


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 717 SQFHLYYSKKNR*KFVLVLKGVPDSAQSTV 806
           S  H Y+ KK+  + ++VL G P S +ST+
Sbjct: 243 SSSHPYHFKKSEHQEIVVLVGFPSSGKSTL 272


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +1

Query: 100 ILYEIINRACYKYTLKSVKFYRKKK 174
           IL  + NRA +K+ L+++KF+ +++
Sbjct: 196 ILQLVPNRAVFKHALRAIKFWAQRR 220


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 501 PISFNQLQNSDD*IKLFNIHKH*IKVPFNSTNLNLTKPLRQ 379
           P ++   Q S   +  F IHK   K P NS  L+   P  Q
Sbjct: 15  PAAYRSFQQSLRPVPRFFIHKMSTKTPINSPKLSSAGPYNQ 55


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 218 NSLYGRNDKNRFCKCFFF-L*NLTDFNVYL*QALLMISYKMYVTEYGT 78
           NSL   ND   F + +   + N  D NV+L   LL  +Y+     YGT
Sbjct: 83  NSLLNDNDIKNFIRSYAERIVNNEDKNVFLDSLLLSPNYEYLEENYGT 130


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 708  PFKSQFHLYYSKKNR*KFVLVLKGVPD 788
            PF      Y  K+N  KFVL L+GV D
Sbjct: 1536 PFDPMVTGYIPKRNAVKFVLSLRGVYD 1562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,873
Number of Sequences: 5004
Number of extensions: 58336
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)