Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18b04
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p...    28   1.9  
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p...    28   1.9  
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p...    28   1.9  
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p...    28   1.9  
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p...    28   1.9  
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr...    28   1.9  
AY389810-1|AAR28682.1|  781|Caenorhabditis elegans zinc finger t...    28   1.9  
Z47358-9|CAA87434.3|  436|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AF003389-7|AAC71133.1|   96|Caenorhabditis elegans Bmp receptor ...    27   3.3  
Z82052-3|CAB04826.1|  363|Caenorhabditis elegans Hypothetical pr...    26   7.5  
U39645-3|AAA80362.3|  439|Caenorhabditis elegans Gustatory recep...    26   7.5  
AF387605-1|AAK70488.1|  427|Caenorhabditis elegans putative chem...    26   7.5  
Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical pr...    25   10.0 
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    25   10.0 
AY389809-1|AAR28681.1|  909|Caenorhabditis elegans zinc finger t...    25   10.0 
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    25   10.0 

>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
           protein T05A10.1a protein.
          Length = 2066

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 245 YEHFYCSALCVVSFIHFVSRST 310
           YE++  S +CV  F+HF S+ T
Sbjct: 627 YENYNISPICVKQFLHFASQLT 648


>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
           protein T05A10.1f protein.
          Length = 2048

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 245 YEHFYCSALCVVSFIHFVSRST 310
           YE++  S +CV  F+HF S+ T
Sbjct: 695 YENYNISPICVKQFLHFASQLT 716


>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
           protein T05A10.1e protein.
          Length = 2101

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 245 YEHFYCSALCVVSFIHFVSRST 310
           YE++  S +CV  F+HF S+ T
Sbjct: 695 YENYNISPICVKQFLHFASQLT 716


>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
           protein T05A10.1d protein.
          Length = 2134

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 245 YEHFYCSALCVVSFIHFVSRST 310
           YE++  S +CV  F+HF S+ T
Sbjct: 695 YENYNISPICVKQFLHFASQLT 716


>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
           protein T05A10.1g protein.
          Length = 1888

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 245 YEHFYCSALCVVSFIHFVSRST 310
           YE++  S +CV  F+HF S+ T
Sbjct: 695 YENYNISPICVKQFLHFASQLT 716


>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical
           protein T05A10.1i protein.
          Length = 1927

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 245 YEHFYCSALCVVSFIHFVSRST 310
           YE++  S +CV  F+HF S+ T
Sbjct: 695 YENYNISPICVKQFLHFASQLT 716


>Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical
           protein T05A10.1j protein.
          Length = 1509

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 245 YEHFYCSALCVVSFIHFVSRST 310
           YE++  S +CV  F+HF S+ T
Sbjct: 695 YENYNISPICVKQFLHFASQLT 716


>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical
           protein T05A10.1c protein.
          Length = 1692

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 245 YEHFYCSALCVVSFIHFVSRST 310
           YE++  S +CV  F+HF S+ T
Sbjct: 253 YENYNISPICVKQFLHFASQLT 274


>AY389810-1|AAR28682.1|  781|Caenorhabditis elegans zinc finger
           transcription factorSMA-9 protein.
          Length = 781

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 245 YEHFYCSALCVVSFIHFVSRST 310
           YE++  S +CV  F+HF S+ T
Sbjct: 275 YENYNISPICVKQFLHFASQLT 296


>Z47358-9|CAA87434.3|  436|Caenorhabditis elegans Hypothetical
           protein ZK1307.7 protein.
          Length = 436

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 243 HAKLHLGSSNKQCVATMAKVTSSPPPWMNYQCPKAHGSR 127
           H K + G  +K+C AT  +   +   +M Y  P   G R
Sbjct: 354 HIKPYSGLGSKRCRATTVRYCDTGSGYMVYDAPNKKGER 392


>AF003389-7|AAC71133.1|   96|Caenorhabditis elegans Bmp receptor
           associated proteinfamily protein 2 protein.
          Length = 96

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 229 SRFFQQTVRRYHGESHFKPP-TMDELPVPKGSWQSHHDANQRRFNAVL 89
           SRF Q+     H  ++  PP T D +PVP  S++  +   Q +FN  L
Sbjct: 13  SRFAQKRHGHGHHVANPGPPCTFDLMPVPFQSYKKVYGELQGKFNTYL 60


>Z82052-3|CAB04826.1|  363|Caenorhabditis elegans Hypothetical
           protein T25E12.8 protein.
          Length = 363

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 182 VTFAMVATHCLLEEPRCNL 238
           +T A++ T+CL ++P C +
Sbjct: 34  ITVAVIVTYCLTKQPACEI 52


>U39645-3|AAA80362.3|  439|Caenorhabditis elegans Gustatory receptor
           family protein 2 protein.
          Length = 439

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -2

Query: 235 IASRFFQQ--TVRRY--HGESHFKPPTMDELPVPKGSWQSHHDAN---QRRFN 98
           +A  F+Q    +RR   H  +   P   DE P+P+ S Q  HD     QR FN
Sbjct: 228 LAILFYQHCSVIRRSIKHLINEMVPAEQDECPLPESSLQKIHDCQISYQRIFN 280


>AF387605-1|AAK70488.1|  427|Caenorhabditis elegans putative
           chemoreceptor GUR-2 protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -2

Query: 235 IASRFFQQ--TVRRY--HGESHFKPPTMDELPVPKGSWQSHHDAN---QRRFN 98
           +A  F+Q    +RR   H  +   P   DE P+P+ S Q  HD     QR FN
Sbjct: 216 LAILFYQHCSVIRRSIKHLINEMVPAEQDECPLPESSLQKIHDCQISYQRIFN 268


>Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical
           protein C31G12.2 protein.
          Length = 195

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 164 HGGGLEVTFAMVATHCLLEEPRCNLACYEHFYC 262
           + GGLE+   +  T+  L + RC+ A +  + C
Sbjct: 158 NAGGLEICATVEITYVSLADQRCDRADFNGYAC 190


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 119  CQPTSLQCCAPLWNCIHCCYIRRCKNIR 36
            C+   L  C+P   CI   Y+ +C+ IR
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIR 1700


>AY389809-1|AAR28681.1|  909|Caenorhabditis elegans zinc finger
           transcription factorSMA-9 protein.
          Length = 909

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 245 YEHFYCSALCVVSFIHFVSRST 310
           YE++  S +CV   +HF S+ T
Sbjct: 627 YENYNISPICVKQLLHFASQLT 648


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 119  CQPTSLQCCAPLWNCIHCCYIRRCKNIR 36
            C+   L  C+P   CI   Y+ +C+ IR
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIR 1700


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,627,947
Number of Sequences: 27780
Number of extensions: 143089
Number of successful extensions: 414
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)