Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a24
         (262 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64847-4|AAB04873.1|  492|Caenorhabditis elegans Cytochrome p450...    27   1.4  
U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z81051-9|CAD21703.1|  531|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AF490975-1|AAQ06433.1|  703|Caenorhabditis elegans ABC7 protein ...    26   3.2  
Z50742-3|CAA90615.1|  492|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z34800-1|CAA84321.2|  420|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine re...    26   4.2  
AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine re...    26   4.2  
U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>U64847-4|AAB04873.1|  492|Caenorhabditis elegans Cytochrome p450
           family protein 14A5 protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 260 LVN*PVSSFDEKSDFLEKIFKMSVWSTLNRTVFKRTSTFAL 138
           L N PV  F+E S F    + M    TLN+TV +RT  F++
Sbjct: 396 LKNDPV--FEENSKFNPDRYLMPDGKTLNKTVLERTIPFSV 434


>U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical
           protein C09B9.2 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 242 SSFDEKSDFLEKIFKMSVWSTLN 174
           SSF  KS F+E+IF MS  S+++
Sbjct: 148 SSFSSKSRFVEQIFGMSAVSSMS 170


>AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical
           protein T10B11.6 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = -1

Query: 244 FRALTRKVIFLRKFSKCPCGLH*IVLFSNVHLRLL-----WLLPEERSSLKEHLN*CLNR 80
           FRA+  K    R F+KCP  +H    FS   +R L     W   EE+  L+E +   +  
Sbjct: 123 FRAIDAKPGDFRSFAKCPIIVH---SFSMNGVRGLISFWKWTEAEEKPQLRERIKGII-- 177

Query: 79  YLKTSTKENYGRTSSTNMKI 20
              ++    YG+  +T M I
Sbjct: 178 -FDSAPSRPYGKQDATAMVI 196


>Z81051-9|CAD21703.1|  531|Caenorhabditis elegans Hypothetical
           protein C55A6.10 protein.
          Length = 531

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = +3

Query: 201 ENFLKK-ITFLVKARNWSIDK 260
           E F+KK +T +++ARNW +D+
Sbjct: 150 EVFMKKQMTDMIRARNWEVDQ 170


>AF490975-1|AAQ06433.1|  703|Caenorhabditis elegans ABC7 protein
           protein.
          Length = 703

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 260 LVN*PVSSFDEKSDFLEKIFKMSVWSTLNRTVFKRTSTF 144
           L N P   +DE +  L+ I + ++   L   V KRTS F
Sbjct: 586 LKNAPFVIYDEATSSLDAITESNIMKALKGAVEKRTSLF 624


>Z50742-3|CAA90615.1|  492|Caenorhabditis elegans Hypothetical
           protein K09A11.3 protein.
          Length = 492

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 260 LVN*PVSSFDEKSDFLEKIFKMSVWSTLNRTVFKRTSTFAL 138
           L N PV  F+E S F    + M+   T+N++V +RT  F++
Sbjct: 396 LKNDPV--FEESSKFNPDRYLMADGKTINKSVLERTIPFSV 434


>Z34800-1|CAA84321.2|  420|Caenorhabditis elegans Hypothetical
           protein F45H7.1 protein.
          Length = 420

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 167 VFKRTSTFALAVAGGTFFF 111
           V KR++TF+L +AG  FFF
Sbjct: 401 VAKRSNTFSLQLAGEFFFF 419


>AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform a protein.
          Length = 308

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 207 NFQNVRVVYIKSYCFQTYIYVCFGCCRRNVL 115
           N  N++++ + S+ F+ +  V FGC  RNV+
Sbjct: 268 NRNNLKIL-LTSFNFKKFFAVIFGCTGRNVV 297


>AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform b protein.
          Length = 329

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 207 NFQNVRVVYIKSYCFQTYIYVCFGCCRRNVL 115
           N  N++++ + S+ F+ +  V FGC  RNV+
Sbjct: 289 NRNNLKIL-LTSFNFKKFFAVIFGCTGRNVV 318


>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 210 ENFQNVRVV-YIKSYCFQTYIYVCFGCCRRNVLL*KN 103
           E   N+ VV YI ++ F TY+ + F CC   + L KN
Sbjct: 173 ETRHNIYVVKYILAFLF-TYLQMHFLCCNSKIDLPKN 208


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical protein
            T10E10.4 protein.
          Length = 966

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 262  DLSIDQFRALTRKVIFLRKFSKCPCGLH*IVLF-SNVHLRLLWLLPEERSSLKEHLN 95
            D ++ Q +     +++ R FS+CP G H    F  +      W+  E + +LK  LN
Sbjct: 906  DKNVPQCQCTNGMLLYGRCFSQCPRGFHESGAFCMHDDEDKFWMDAESQDNLKALLN 962


>U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical
           protein C01C4.2 protein.
          Length = 244

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 97  SNVLSKKNVPPATAKANVDVRLKTVRFNVDHTDILKIFSR--KSLFSSKLET 246
           +NVLS      A  KA      +     V+H DI ++FSR   +L++S  ET
Sbjct: 146 ANVLSYTPRSEALQKAEKIFNDQMPSLPVEHKDIPQVFSRSPSNLYNSNNET 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,000,259
Number of Sequences: 27780
Number of extensions: 106069
Number of successful extensions: 271
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)