Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a22
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    31   0.15 
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.8  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   3.2  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   3.2  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = -1

Query: 752 SSY*NINYFRILTLRPSILSFYVTDFKLPKFLQ*FKNMFYNWTRQYLTYLWYVTYLSAIS 573
           S+Y +IN+FR  TL   +L FY++ F L       K    N T+  L   +  T L    
Sbjct: 9   SNYIDINFFRNATLDQCLLLFYLSLFSLTNLFLIQKLFHANHTQHPLKKYFGETCLLEYI 68

Query: 572 EMIRELVWSASCF 534
           ++I  +V +A  F
Sbjct: 69  QIILSIVSAALSF 81


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -2

Query: 700 F*AFMLLILSYQNFYNNLRICFIIGHANI*LTYGMSRTYRPLVR*YVS*FGPHRVFVRQ 524
           F  +   +L + +    L +C +  H ++ LTY +S  YR  +      F  H+V V +
Sbjct: 53  FQGYQKAVLDFHHLLTPLVVCIMDYHNDLFLTYSLSNAYREYIFDGGLPFSKHQVRVNR 111


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +1

Query: 439  YLNIKLTKLSFDLSKT----IQTYLKISKNFFSVGQKHDADQTNSRIISLMADKYVTYHK 606
            Y+  K ++L F  S+T    +  Y +  +   S   ++D +Q  SR++    D+Y + HK
Sbjct: 989  YMAAKKSELGFVQSQTARENLSNYYQALQMTVSEKFEYDTEQLPSRVLFYAMDRYFSIHK 1048


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/45 (20%), Positives = 24/45 (53%)
 Frame = +1

Query: 490 QTYLKISKNFFSVGQKHDADQTNSRIISLMADKYVTYHK*VRYWR 624
           +TY +    +  V   +D + TN+  ++ + D+ ++ H  ++ W+
Sbjct: 477 ETYPRYKNLYLKVSSYYDNNDTNNPNLNKLQDELISLHSQLKSWK 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,807
Number of Sequences: 5004
Number of extensions: 52904
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)