Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a22
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resis...    28   9.3  
U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resis...    28   9.3  

>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 228  TTFKISGNLSFYVT*VQFNGLTPYMPIHHYY 136
            ++F +SG  +  +     N L PY+PIH YY
Sbjct: 2270 SSFGVSGTNAAAIAFNDNNKLEPYIPIHKYY 2300


>U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug
           resistance related protein2 protein.
          Length = 1525

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 252 KIINSNTSTTFKISGNLSFYVT*VQFNGLTPYMPIHHYYSNLILLQNIAFN 100
           K+ +  +S    + G ++     VQ NG   Y+P   +  N+ L  NI FN
Sbjct: 649 KVGSGKSSLLHALLGEMNKLSGSVQINGNIAYVPQQAWIQNMSLRNNILFN 699


>U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 2 protein.
          Length = 1525

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 252 KIINSNTSTTFKISGNLSFYVT*VQFNGLTPYMPIHHYYSNLILLQNIAFN 100
           K+ +  +S    + G ++     VQ NG   Y+P   +  N+ L  NI FN
Sbjct: 649 KVGSGKSSLLHALLGEMNKLSGSVQINGNIAYVPQQAWIQNMSLRNNILFN 699


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,958,477
Number of Sequences: 27780
Number of extensions: 275112
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)