Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a15
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    31   0.22 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   2.7  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   3.5  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    26   8.1  

>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 22/78 (28%), Positives = 29/78 (37%)
 Frame = -1

Query: 788 PTKEAVEGLSNKVNEEVNKLMKAEGSGAVVSACHERGFTVTGTSAAVRVLITTLHQNLRK 609
           P+  A E L            +        SA HE  F +  TS A  + I+        
Sbjct: 45  PSNHATEELQQSSTNSTTLPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVS 104

Query: 608 IEPDVHLDYKVISSHLAA 555
            EP+V  D K +SS  AA
Sbjct: 105 SEPNVEADVKSLSSTPAA 122


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 693 RAHHCTAAFSLHQLVHLLVNLIGESLDSLFRWQSFHD 803
           R  +  AA SL + + +  N++ E + S+F W+   D
Sbjct: 772 RGFYSRAADSLEKSIQICCNVLKEDITSIFSWEILGD 808


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 572  SSHLAAIRHSRWFEENAHHSSIKVLIRLLRDMC 474
            + HLAA+ +S    +N +H +I +LI  L D C
Sbjct: 910  TKHLAALINSESANDNLNHWAISLLIFQLYDPC 942


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 467 HSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFR 360
           H  LE LTP  +  +    + NN  + +L IN+ ++
Sbjct: 183 HEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYK 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,829
Number of Sequences: 5004
Number of extensions: 49877
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)