Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a14
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   310   2e-85
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   304   1e-83
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.5  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   5.8  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  310 bits (760), Expect = 2e-85
 Identities = 149/207 (71%), Positives = 168/207 (81%)
 Frame = -1

Query: 823 PMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXV 644
           PMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM            V
Sbjct: 129 PMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKTV 188

Query: 643 DGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 464
           DGPS K WR GRGA  NIIP+STGAAKAVGKVIPALNGKLTGMAFRVP  +VSVVDLTV+
Sbjct: 189 DGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVK 248

Query: 463 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 284
           L KP +YE IK  +K A+EGP+KG+LGYTED VVS+DF GD+HSSIFDA+AGI L+  FV
Sbjct: 249 LAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFV 308

Query: 283 KLISWYDNEYGYSSRVIDLIKYIQSKD 203
           KL+SWYDNE+GYS RV+DL+ Y  SKD
Sbjct: 309 KLVSWYDNEWGYSHRVVDLVAYTASKD 335


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  304 bits (746), Expect = 1e-83
 Identities = 146/207 (70%), Positives = 167/207 (80%)
 Frame = -1

Query: 823 PMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXV 644
           PM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM            V
Sbjct: 129 PMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKTV 188

Query: 643 DGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 464
           DGPS K WR GRGA  NIIP+STGAAKAVGKVIPALNGKLTGMAFRVP  +VSVVDLTV+
Sbjct: 189 DGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVK 248

Query: 463 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 284
           L KP +YE IK  +K A+EGP+KG+LGYTED VVS+DF GD+HSSIFDA+AGI L+  FV
Sbjct: 249 LAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFV 308

Query: 283 KLISWYDNEYGYSSRVIDLIKYIQSKD 203
           KL+SWYDNE+GYS RV+DL+ Y  +KD
Sbjct: 309 KLVSWYDNEWGYSRRVVDLVAYTAAKD 335


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +2

Query: 362 HNLIFSIPE---NALQRTFSCLLDLLLDGF 442
           +++I  IPE   N++Q T  C+LD +LD F
Sbjct: 174 NDMIDEIPEKLENSIQTTIDCVLDFVLDVF 203


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 307 ISLNDNFV-KLISWYDNEYGYSSRVIDLIKYI 215
           +  +DNFV K I+WY N   YSS +    +Y+
Sbjct: 307 LGYSDNFVNKGINWYYNWGSYSSGLSSSFEYV 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,692
Number of Sequences: 5004
Number of extensions: 61801
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)