Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18a14
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 297 5e-81
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 296 2e-80
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 293 1e-79
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 293 2e-79
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 292 3e-79
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 182 4e-46
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 171 8e-43
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 28 8.1
06_03_1221 - 28514952-28518152 28 8.1
05_02_0101 + 6611694-6611834,6612651-6612734,6613035-6613096,661... 28 8.1
03_03_0278 - 16126803-16129049 28 8.1
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 297 bits (730), Expect = 5e-81
Identities = 143/203 (70%), Positives = 164/203 (80%)
Frame = -1
Query: 823 PMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXV 644
PMFVVGVN + Y P ++SNASCTTNCLAPLAKVI+D F IVEGLM V
Sbjct: 179 PMFVVGVNEKEYKPDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTV 238
Query: 643 DGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 464
DGPS K WR GR A NIIP+STGAAKAVGKV+PALNGKLTGMAFRVP +VSVVDLTVR
Sbjct: 239 DGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVR 298
Query: 463 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 284
L KPASY+ IK +KE +EG LKGILGY E+ +VS+DF GD+ SSIFDA AGI+LNDNFV
Sbjct: 299 LEKPASYDQIKAAIKEESEGKLKGILGYVEEDLVSTDFQGDNRSSIFDAKAGIALNDNFV 358
Query: 283 KLISWYDNEYGYSSRVIDLIKYI 215
KL+SWYDNE+GYSSRV+DLI+++
Sbjct: 359 KLVSWYDNEWGYSSRVVDLIRHM 381
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 296 bits (726), Expect = 2e-80
Identities = 141/203 (69%), Positives = 165/203 (81%)
Frame = -1
Query: 823 PMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXV 644
PMFVVGVN + Y+PS V+SNASCTTNCLAPLAK++H+ F I EGLM V
Sbjct: 206 PMFVVGVNEKNYNPSMNVVSNASCTTNCLAPLAKIVHEEFGIAEGLMTTVHATTATQKTV 265
Query: 643 DGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 464
DGPS K WR GRGA QNIIP+STGAAKAVGKV+PALNGKLTGMAFRVP NVSVVDLT R
Sbjct: 266 DGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPNVSVVDLTCR 325
Query: 463 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 284
L K ASYE +K +KEA+EG LKGILGYT++ VVS+DFIGD+ SSIFDA AGI L+ +F+
Sbjct: 326 LEKSASYEDVKAAIKEASEGSLKGILGYTDEDVVSNDFIGDTRSSIFDAKAGIGLSSSFM 385
Query: 283 KLISWYDNEYGYSSRVIDLIKYI 215
KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 386 KLVSWYDNEWGYSNRVLDLIGHM 408
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 293 bits (719), Expect = 1e-79
Identities = 138/203 (67%), Positives = 163/203 (80%)
Frame = -1
Query: 823 PMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXV 644
PMFV GVN + Y ++SNASCTTNCLAPLAKVIHDNF I+EGLM V
Sbjct: 154 PMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTV 213
Query: 643 DGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 464
DGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLTGM+FRVP +VSVVDLTVR
Sbjct: 214 DGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVR 273
Query: 463 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 284
+ K ASY+AIK +K A+EG LKGI+GY E+ +VS+DF+GDS SSIFDA AGI+LNDNFV
Sbjct: 274 IEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFV 333
Query: 283 KLISWYDNEYGYSSRVIDLIKYI 215
KL++WYDNE+GYS+RVIDLI+++
Sbjct: 334 KLVAWYDNEWGYSNRVIDLIRHM 356
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 293 bits (718), Expect = 2e-79
Identities = 138/203 (67%), Positives = 164/203 (80%)
Frame = -1
Query: 823 PMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXV 644
PMFVVGVN ++YDP V+SNASCTTNCLAPLAKV+H+ F IVEGLM V
Sbjct: 265 PMFVVGVNEKSYDPKMNVVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTV 324
Query: 643 DGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 464
DGPS K WR GRGA QNIIP+STGAAKAVGKV+P LNGKLTGMAFRVP NVSVVDLT R
Sbjct: 325 DGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCR 384
Query: 463 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 284
+ K ASY+ +K +K A+EG LKGILGYT++ VVS+DF+GD+ SSIFDA AGI L+ +F+
Sbjct: 385 IEKSASYDDVKAAIKAASEGALKGILGYTDEDVVSNDFVGDARSSIFDAKAGIGLSSSFM 444
Query: 283 KLISWYDNEYGYSSRVIDLIKYI 215
KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 445 KLVSWYDNEWGYSNRVLDLIAHM 467
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 292 bits (716), Expect = 3e-79
Identities = 143/205 (69%), Positives = 163/205 (79%)
Frame = -1
Query: 823 PMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXV 644
PMFVVGVN + Y ++SNASCTTNCLAPLAKVI+D F IVEGLM V
Sbjct: 150 PMFVVGVNEKEYKSDVNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTV 209
Query: 643 DGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 464
DGPS K WR GR A NIIP+STGAAKAVGKV+PALNGKLTGMAFRVP +VSVVDLTVR
Sbjct: 210 DGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVR 269
Query: 463 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 284
L KPASY+ IK +KE AEG LKGILGY E+ +VS+DF GDS SSIFDA AGI+L+D FV
Sbjct: 270 LEKPASYDQIKAAIKEEAEGKLKGILGYVEEDLVSTDFQGDSRSSIFDAKAGIALSDTFV 329
Query: 283 KLISWYDNEYGYSSRVIDLIKYIQS 209
KL+SWYDNE+GYS+RVIDLI+++ S
Sbjct: 330 KLVSWYDNEWGYSTRVIDLIRHMHS 354
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 182 bits (442), Expect = 4e-46
Identities = 93/206 (45%), Positives = 123/206 (59%)
Frame = -1
Query: 823 PMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXV 644
P +VVGVN + Y P +ISNASCTTNCLAP K++ F I++G M +
Sbjct: 196 PTYVVGVNADQYSPDEPIISNASCTTNCLAPFVKILDQKFGIIKGTMTTTHSYTGDQRLL 255
Query: 643 DGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 464
D L R R A NI+P STGAAKAV V+P L GKL G+A RVP NVSVVDL V+
Sbjct: 256 DASHRDL-RRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQ 314
Query: 463 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 284
+ K E + Q +++A LKGIL + +VS DF S DA+ + + D+ V
Sbjct: 315 VSKKTLAEEVNQAFRDSAANELKGILEVCDVPLVSVDFRCSDVSCTIDASLSMVMGDDMV 374
Query: 283 KLISWYDNEYGYSSRVIDLIKYIQSK 206
K+I+WYDNE+GYS RV+DL + ++
Sbjct: 375 KVIAWYDNEWGYSQRVVDLADIVANQ 400
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 171 bits (415), Expect = 8e-43
Identities = 93/208 (44%), Positives = 122/208 (58%), Gaps = 2/208 (0%)
Frame = -1
Query: 823 PMFVVGVNLEAYDPSF-KVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 647
P +V+GVN Y +ISNASCTTNCLAP K++ + F IV+G M
Sbjct: 207 PTYVLGVNEGDYSHEVANIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRL 266
Query: 646 VDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 467
+D L R R A NI+P STGAAKAV V+P L GKL G+A RVP NVSVVDL +
Sbjct: 267 LDASHRDL-RRARAAALNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTPNVSVVDLVI 325
Query: 466 RLGKPA-SYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDN 290
K + + + ++AA GPL GIL + +VS DF SS DA+ + + D+
Sbjct: 326 NTVKTGITADDVNAAFRKAAAGPLSGILDVCDVPLVSVDFRCSDVSSTIDASLTMVMGDD 385
Query: 289 FVKLISWYDNEYGYSSRVIDLIKYIQSK 206
VK+++WYDNE+GYS RV+DL + SK
Sbjct: 386 MVKVVAWYDNEWGYSQRVVDLAHLVASK 413
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 255 YSLSYQLISFTKLSFKEIPAAASKIEECESPMK 353
YSL + + TK FK+ K EEC +P K
Sbjct: 77 YSLVMKCLENTKNDFKKCKTLIDKYEECSNPPK 109
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 28.3 bits (60), Expect = 8.1
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Frame = -1
Query: 643 DGPSGKLWRDGRGAQQNIIP--ASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 470
DG +LW GRG I P A+ A + +L+G+ + F +P N +VVD++
Sbjct: 72 DGAVTRLWLPGRGLGGTISPSIANLTALTYLNLSGNSLSGRFPDLLFALP--NATVVDVS 129
Query: 469 VRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAG-ISLN 296
S E V AA +G L V S+ G S+I++ +SLN
Sbjct: 130 Y---NRLSGELPNAPVAAAAATNARGSLSLQVLDVSSNLLAGRFPSAIWEHTPRLVSLN 185
>05_02_0101 +
6611694-6611834,6612651-6612734,6613035-6613096,
6613304-6613322
Length = 101
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 601 QQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKV 422
QQ A+TG K V P +NG +GM + + +V + ++LG+ ++ + K +
Sbjct: 9 QQQTAAAATGVWKTVK---PFVNGGASGMLATCVIQPIDMVKVKIQLGEGSAAQVTKNML 65
Query: 421 KEAAEGPL-KGI 389
G KG+
Sbjct: 66 ANEGIGSFYKGL 77
>03_03_0278 - 16126803-16129049
Length = 748
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 770 HLKCFLHHKLSCPTCK 723
+LK +L+H L CPTC+
Sbjct: 220 YLKVYLNHNLLCPTCR 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,346,898
Number of Sequences: 37544
Number of extensions: 398754
Number of successful extensions: 1028
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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