Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a11
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.62 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.62 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   7.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 594 EELTRTCSIYNITIDRIGNLFL*CM*SFVFFLPKVFIFKF 475
           E    TCS   +T D    +F+ C+  + + +P +FI  F
Sbjct: 200 EGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILF 239


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 594 EELTRTCSIYNITIDRIGNLFL*CM*SFVFFLPKVFIFKF 475
           E    TCS   +T D    +F+ C+  + + +P +FI  F
Sbjct: 200 EGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILF 239


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 108 FLNSI*YNFIDGYQRQLRC 52
           FLNS   +FID  Q+ L+C
Sbjct: 127 FLNSESKDFIDFIQKNLQC 145


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 797 LDRNIVHIIEKSCGL 753
           LD + VHII+  CG+
Sbjct: 271 LDTSKVHIIDSICGI 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,610
Number of Sequences: 438
Number of extensions: 5096
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)