Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18a10
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 173 4e-44
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 139 4e-34
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 138 1e-33
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 109 5e-25
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 106 4e-24
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 97 2e-21
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 95 1e-20
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 92 8e-20
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 78 1e-15
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 73 5e-14
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 60 4e-10
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 57 4e-09
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 45 2e-05
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 44 2e-05
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 44 4e-05
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 43 5e-05
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 42 1e-04
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 42 1e-04
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 42 1e-04
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 39 0.001
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|... 29 0.87
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 27 3.5
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 4.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 6.1
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 173 bits (420), Expect = 4e-44
Identities = 77/128 (60%), Positives = 105/128 (82%)
Frame = -1
Query: 875 KKXKLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADV 696
K+ KLQIWDTAGQERFRTITTAYYRG+MGI+L+YDVT++KSF+N++ W N+E++AS +V
Sbjct: 56 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENV 115
Query: 695 EKMILGNKCDLDSQRQVSKERGEQLAIEYQIKFVETSAKDSLNVEYAFYTLARDIKAKME 516
K+++GNKCD + QRQVS E+G+ LA E +KF+E SAK ++NV+ AF+TLAR+IK +
Sbjct: 116 YKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKI 175
Query: 515 KKQKEASN 492
+ E SN
Sbjct: 176 DAENEFSN 183
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 139 bits (337), Expect = 4e-34
Identities = 66/150 (44%), Positives = 98/150 (65%), Gaps = 4/150 (2%)
Frame = -1
Query: 875 KKXKLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADV 696
KK K QIWDTAGQER+R IT+AYYRG++G ++VYD+T + SF+N+ W++ + E+A +++
Sbjct: 57 KKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNI 116
Query: 695 EKMILGNKCDLDSQRQVSKERGEQLAIEYQIKFVETSAKDSLNVEYAFYTLARDIKAKME 516
M++GNK DL R VS E + A E + F+ETSA D+ NVE AF T+ +I +
Sbjct: 117 VIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVS 176
Query: 515 KKQKEAS----NPSGGRSGVHKPTLNDARK 438
+ EA +P+ G++ PT+ND K
Sbjct: 177 NRSLEAGDDGVHPTAGQTLNIAPTMNDLNK 206
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 138 bits (334), Expect = 1e-33
Identities = 64/128 (50%), Positives = 89/128 (69%)
Frame = -1
Query: 875 KKXKLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADV 696
K KLQIWDTAGQERFRTIT++YYRG+ GI++VYDVT++ SF N+K W++ I+ A V
Sbjct: 55 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGV 114
Query: 695 EKMILGNKCDLDSQRQVSKERGEQLAIEYQIKFVETSAKDSLNVEYAFYTLARDIKAKME 516
++++GNK D+ ++ V ++ A I F+ETSAKDS NVE AF T++R IK +M
Sbjct: 115 NRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMG 174
Query: 515 KKQKEASN 492
+SN
Sbjct: 175 NNTFASSN 182
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 109 bits (262), Expect = 5e-25
Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Frame = -1
Query: 875 KKXKLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADV 696
K+ KLQIWDTAGQE+FR++ YYRG+ G +LVYDVTN+ SFE + +W+ +I A + +
Sbjct: 60 KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTI 119
Query: 695 EKMILGNKCDLDSQRQVSKERGEQLAIEYQIKFV-ETSAKDSLNVEYAFYTLARDIKAKM 519
++ G+K DL +QRQVS E + E I ETS+ NVE F ++ I ++
Sbjct: 120 CVVLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTIITRI 179
Query: 518 EKKQKEASNPSGG 480
E + + + S G
Sbjct: 180 ELGEIDPQDQSLG 192
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 106 bits (255), Expect = 4e-24
Identities = 50/110 (45%), Positives = 73/110 (66%)
Frame = -1
Query: 866 KLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKM 687
+LQ+WDTAGQERFR++ +Y R S ++VYD+TN SF N + WI ++ DV +
Sbjct: 61 RLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIV 120
Query: 686 ILGNKCDLDSQRQVSKERGEQLAIEYQIKFVETSAKDSLNVEYAFYTLAR 537
++GNK DL +RQV++E GE+ A E +I +ETSAK NV+ F +A+
Sbjct: 121 LVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQ 170
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 97.5 bits (232), Expect = 2e-21
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Frame = -1
Query: 863 LQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMI 684
L + DTAGQE + + Y R G +LVY++T+ SF+ I + + I D ++
Sbjct: 58 LDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVV 117
Query: 683 L-GNKCDLDSQRQVSKERGEQLAIEYQIKFVETSAKDSLNVEYAFYTLARDIKAKMEKKQ 507
L NKCDL+++R VS+ GEQLA +VETSAK LNVE AFY+L R I+ + ++
Sbjct: 118 LVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEE 177
Query: 506 KEASN 492
K N
Sbjct: 178 KGFQN 182
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 95.1 bits (226), Expect = 1e-20
Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Frame = -1
Query: 866 KLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKM 687
KL+IWDTAGQER++++ YYR + ++VYD+T S E K+WI+ ++ A +
Sbjct: 65 KLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIA 124
Query: 686 ILGNKCDLDSQRQ-VSKERGEQLAIEYQIKFVETSAKDSLNVEYAFYTLARDIKAKMEKK 510
+ GNK DL +R+ V K E A E + F ETSAK + NV F +A+ K +E K
Sbjct: 125 LAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAK--KLPLEDK 182
Query: 509 QKEA 498
+A
Sbjct: 183 LNQA 186
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 92.3 bits (219), Expect = 8e-20
Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 6/119 (5%)
Frame = -1
Query: 875 KKXKLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADV 696
K LQ+WDTAGQERF+++ A+YRG+ +LVYDV N KSFE + +W AS
Sbjct: 55 KVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSN 114
Query: 695 EK----MILGNKCDLDSQ-RQVSKERGEQLA-IEYQIKFVETSAKDSLNVEYAFYTLAR 537
+ ++LGNK D++ Q R VSK + +I + ETSAK+++NV+ AF T+A+
Sbjct: 115 PETFPFILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAK 173
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 78.2 bits (184), Expect = 1e-15
Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
Frame = -1
Query: 875 KKXKLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASAD- 699
K LQ+WDTAGQERF+++ A+YRG+ ++VY+V N KSF++++NW + S D
Sbjct: 55 KLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
Query: 698 --VEKMILGNKCDLD-SQRQVSKERG-EQLAIEYQIKFV--ETSAKDSLNVEYAFYTLAR 537
+I+GN+ D D S+R VS R + ++ + E SAK++ NV F T++R
Sbjct: 115 CAFPFIIVGNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVSR 174
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 72.9 bits (171), Expect = 5e-14
Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Frame = -1
Query: 860 QIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASAD-VEKMI 684
+I DTAGQ+ + + + + G G +LVY +T++ SFE +K I + + V ++
Sbjct: 57 EIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVV 116
Query: 683 LGNKCDLDSQRQVSKERGEQLAIEYQIKFVETSAKDSLNVEYAFYTLARDIKAKMEKKQK 504
+GNK DL QR V+ E G+ LA E++ + E SA+ + NV AF + +I +KQ
Sbjct: 117 VGNKSDLHMQRAVTAEEGKALANEWKCAWTEASARHNENVARAFELIISEI-----EKQA 171
Query: 503 EASNPSGGRSGV 468
S P G+ V
Sbjct: 172 NPSPPGDGKGCV 183
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 60.1 bits (139), Expect = 4e-10
Identities = 34/110 (30%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Frame = -1
Query: 857 IWDTAGQERFRTITTAYY-RGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMIL 681
+WDTAGQE+ + YY +G GI +++DVT+ +++N+ +W R++ ++ ++
Sbjct: 62 VWDTAGQEKLGGLRDGYYIQGQCGI-IMFDVTSRITYKNVPHWWRDL-VRVCENIPIVLC 119
Query: 680 GNKCDLDSQRQVSKERGEQLAIEYQIKFVETSAKDSLNVEYAFYTLARDI 531
GNK D+ +R+V K + + +++ + SAK + N E F LAR +
Sbjct: 120 GNKVDV-KERKV-KAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 56.8 bits (131), Expect = 4e-09
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Frame = -1
Query: 866 KLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFEN-IKNWIRNIEENASADVEK 690
+L +WDTAGQE + + + Y + IM+ + V + S EN I W+ + N V+
Sbjct: 62 ELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPG-VKL 120
Query: 689 MILGNKCDL--------DSQRQVSKERGEQLAIEYQ-IKFVETSAKDSLNVEYAFYTLAR 537
+++ KCDL D + + E G A + ++++E SAK + V AF AR
Sbjct: 121 VLVALKCDLRGADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAAR 180
Query: 536 DIKAKMEKKQKEASNPSGG 480
A + K+ ++ S G
Sbjct: 181 VALAAQPRGTKDGADESHG 199
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 44.8 bits (101), Expect = 2e-05
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Frame = -1
Query: 866 KLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENI-KNWIRNIEENASADVEK 690
+L +WDTAGQE + + Y S +++ + V +S +N+ + WI + S ++
Sbjct: 55 ELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS-NLPI 113
Query: 689 MILGNKCDL------------DSQRQVSKERGEQLAIEY-QIKFVETSAKDSLNVEYAFY 549
+++G K DL SQ+ ++ E G+ +A + K++E SAK + V F
Sbjct: 114 LLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFE 173
Query: 548 TLAR 537
T AR
Sbjct: 174 TAAR 177
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 44.4 bits (100), Expect = 2e-05
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Frame = -1
Query: 866 KLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENI-KNWIRNIEENASADVEK 690
+L +WDTAGQE + + Y S I++ + V + S +N+ + WI + S+ +
Sbjct: 55 ELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSS-LPI 113
Query: 689 MILGNKCDL------------DSQRQVSKERGEQLAIEY-QIKFVETSAKDSLNVEYAFY 549
+++ K DL +Q V+ E G+ +A + K++E SAK + V F
Sbjct: 114 LLVACKADLRNDPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFE 173
Query: 548 TLARDIKAKMEKKQKEAS 495
+ R K + K K +S
Sbjct: 174 SATRAAMLKHKPKVKPSS 191
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 43.6 bits (98), Expect = 4e-05
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Frame = -1
Query: 863 LQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIK-NWIRNIEENASADVEKM 687
L ++DTAGQE + + Y + ++ + VT+ SFEN+K W + + V +
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPG-VPCL 111
Query: 686 ILGNKCDL------------DSQRQVSKERGEQLAIEY-QIKFVETSAKDSLNVEYAF 552
I+G + DL Q ++ E+GE+LA E +K+VE SA ++ F
Sbjct: 112 IVGTQIDLRDDPSVQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVF 169
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 43.2 bits (97), Expect = 5e-05
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 875 KKXKLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWI-RNIEENASAD 699
K K +WD GQ++ R + Y+ G+ G++ V D + + + R I + D
Sbjct: 63 KNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRD 122
Query: 698 VEKMILGNKCDL 663
++L NK DL
Sbjct: 123 CLLLVLANKQDL 134
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 41.9 bits (94), Expect = 1e-04
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Frame = -1
Query: 875 KKXKLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENI-KNWIRNIEENASAD 699
K +L +WDTAGQE + + Y S I+L + + S N+ + W + ++
Sbjct: 62 KVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEV-QHFCPR 120
Query: 698 VEKMILGNKCDLDSQRQ------------VSKERGEQLAIEYQIKFVETSAKDSLNVEYA 555
+++G K DL R V+ ++ + +A+ +VE SAK++ V
Sbjct: 121 TPIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEV 180
Query: 554 F 552
F
Sbjct: 181 F 181
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 41.9 bits (94), Expect = 1e-04
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Frame = -1
Query: 866 KLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRN-IEENASADVEK 690
+ IWD GQ+ R Y+ + I+ V D ++ E +N ++ + E
Sbjct: 61 RFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSI 120
Query: 689 MILGNKCDLD---SQRQVSKERGEQLAIEYQIKFVETSAKDSLNVEYAFYTLARDIK 528
++L NK D+ S ++SK + SA LN++ A LA D+K
Sbjct: 121 LVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -1
Query: 875 KKXKLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIK-NWIRNIEENASAD 699
K +L +WDTAGQE + + Y + I++ + + + S EN+ WI I +
Sbjct: 54 KSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEI-NTLCPN 112
Query: 698 VEKMILGNKCDLDS 657
V +++G K DL S
Sbjct: 113 VPFILVGMKADLRS 126
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -1
Query: 857 IWDTAGQERFRTITTAYYRGSMGIMLVYDVTN-EKSFENIKNWIRNIEENASADVEKMIL 681
+WD GQ++ R + Y++ + GI+ V D + E+ E + R + E+ D ++
Sbjct: 65 VWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVF 124
Query: 680 GNKCDL 663
NK DL
Sbjct: 125 ANKQDL 130
>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 29.1 bits (62), Expect = 0.87
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -2
Query: 388 LRPPPQPYSNIVVL*TAHLDYIFLPTLLDGALTSCGDETCFCIFISKTTNTYLISSLK 215
LRP P+P+S ++L T FL + TCF F SKT + + IS K
Sbjct: 8 LRPIPEPFSLTLLLGTRETPVTFLFHYYLYHALKAKESTCFLTF-SKTLDEHAISMRK 64
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -1
Query: 791 GIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILG 678
GI L+ + E ++ +++ I+ENA + V +++LG
Sbjct: 947 GINLITSLIKEYGKNSVLRYMKAIQENAESAVRQLLLG 984
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 511 FFSIFAFMSLAKV*NAYSTF-NESFADVSTNF 603
FFS ++LA + YS F N SF D T+F
Sbjct: 11 FFSFERLLTLANANSLYSPFNNSSFVDSDTSF 42
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 786 NSHRTTVVCCCYCTESLLTSS 848
+SH+T++VC Y E LL S
Sbjct: 1331 DSHKTSIVCILYLLEVLLADS 1351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,078
Number of Sequences: 5004
Number of extensions: 64894
Number of successful extensions: 207
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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