Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18a10
(875 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB083010-1|BAC54131.1| 132|Apis mellifera fatty acid binding pr... 25 1.2
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 23 3.7
EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate isome... 23 4.9
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 23 4.9
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 22 8.5
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 22 8.5
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 22 8.5
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 22 8.5
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 22 8.5
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 8.5
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 8.5
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 8.5
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 8.5
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 8.5
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 8.5
>AB083010-1|BAC54131.1| 132|Apis mellifera fatty acid binding
protein protein.
Length = 132
Score = 24.6 bits (51), Expect = 1.2
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 779 VYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKERGE-QLAIEYQI 603
+Y + F+N + + EE V+ + + C LD + + ++GE Q IE +
Sbjct: 49 LYTLKTTSPFKNTEIKFKLGEEFEEETVDGRKVKSVCTLDGNKLIQVQKGEKQTTIEREF 108
Query: 602 KFVETSA 582
E A
Sbjct: 109 SSTEMKA 115
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 23.0 bits (47), Expect = 3.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 864 ITNMGYCWSREIPYNNNSI 808
+T GYC E+PY+ I
Sbjct: 320 VTLKGYCIDMEVPYSGTLI 338
>EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate
isomerase protein.
Length = 247
Score = 22.6 bits (46), Expect = 4.9
Identities = 8/39 (20%), Positives = 18/39 (46%)
Frame = -1
Query: 749 ENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKER 633
E ++NW A+ ++I G + + ++KE+
Sbjct: 185 EKLRNWFSKNVNQTVAETVRIIYGGSVTAGNAKDLAKEK 223
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.6 bits (46), Expect = 4.9
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 139 NFKFLNTKSNYKPITDNLMH 198
N+ + N +NYKP+ N+++
Sbjct: 321 NYNYNNYNNNYKPLYYNIIN 340
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 8.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 139 NFKFLNTKSNYKPITDNL 192
N+ + N +NYKP+ N+
Sbjct: 88 NYNYNNYNNNYKPLYYNI 105
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 8.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 139 NFKFLNTKSNYKPITDNL 192
N+ + N +NYKP+ N+
Sbjct: 88 NYNYNNYNNNYKPLYYNI 105
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 8.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 139 NFKFLNTKSNYKPITDNL 192
N+ + N +NYKP+ N+
Sbjct: 88 NYNYNNYNNNYKPLYYNI 105
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 8.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 139 NFKFLNTKSNYKPITDNL 192
N+ + N +NYKP+ N+
Sbjct: 88 NYNYNNYNNNYKPLYYNI 105
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 21.8 bits (44), Expect = 8.5
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = +3
Query: 810 CCCYCTESL 836
CCC+C ++L
Sbjct: 11 CCCWCCDNL 19
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 8.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 139 NFKFLNTKSNYKPITDNL 192
N+ + N +NYKP+ N+
Sbjct: 321 NYNYNNYNNNYKPLYYNI 338
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 8.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 139 NFKFLNTKSNYKPITDNL 192
N+ + N +NYKP+ N+
Sbjct: 321 NYNYNNYNNNYKPLHYNI 338
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 8.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 139 NFKFLNTKSNYKPITDNL 192
N+ + N +NYKP+ N+
Sbjct: 321 NYNYNNYNNNYKPLYYNI 338
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 8.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 139 NFKFLNTKSNYKPITDNL 192
N+ + N +NYKP+ N+
Sbjct: 321 NYNYNNYNNNYKPLYYNI 338
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 8.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 139 NFKFLNTKSNYKPITDNL 192
N+ + N +NYKP+ N+
Sbjct: 310 NYNYNNYNNNYKPLYYNI 327
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.8 bits (44), Expect = 8.5
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = -1
Query: 482 GRSGVHKPTLNDARKPVTWLSRCSVL*PRLHTTTPAPA---LF*HCGTLNCPP 333
GR VH + N + + SRCSV ++ + P+ L C TL P
Sbjct: 310 GRGSVHNGSNNGSPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNTLERTP 362
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,002
Number of Sequences: 438
Number of extensions: 4672
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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