Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a09
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    29   1.1  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    29   1.1  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    27   3.4  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   3.4  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   6.0  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.9  

>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 19/172 (11%)
 Frame = -3

Query: 830 AEVVLTKQLKDETIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTTL 651
           A VVL  +  DE IR+T NV+  V     E    TE ++  E++++ +   D    +   
Sbjct: 96  AVVVLKAKHGDENIRITMNVSQDVTDAVPEEQDFTEFEDEQELQNQGESAEDEFPNEDLG 155

Query: 650 GF-TCSYLQDPP-----AASADEYNDVFGIDEITLYK-----------GEWNDKVYAVAX 522
            F  C+     P        A   +D F I+ I   K            EW  +   +  
Sbjct: 156 RFQPCTIEISKPGNGALVFEATALDDGFDIENIYFSKDIDMLTSDSLEAEWKRRKQYLGP 215

Query: 521 XXXXXXXXXXLM--NLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
                      +  + LEE+ I    +  +  F    E   YIN LES+ +F
Sbjct: 216 SFKELDPELQDLFHSYLEERKIDESLSSFIVSFGLTKELKEYINWLESVRQF 267


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 438 VGLQYCLRAHGVHQSSGVHI 379
           +G+  C+R  GVH+S GVH+
Sbjct: 44  LGVFICIRCSGVHRSLGVHV 63


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -3

Query: 758 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQDPPAASADEYNDVFGI 579
           D +D + +++ EK+E  E + KP    ++   D T G     L+D  +   DE +D +  
Sbjct: 268 DDEDEDEELEGEKEEEEEEKEKP----EISNYDETEGKVNFSLEDSESLEFDEGSDDYDY 323

Query: 578 DEIT 567
            ++T
Sbjct: 324 AKLT 327


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 28  LKAVLAQKLPPTTTKILSAFIHSVC--LTEEKQSTSSKTIVNM 150
           LKAVL +   PT  ++++ ++ ++   L EEK + +   ++N+
Sbjct: 349 LKAVLGEIKVPTNEEVIAKYVANIAAQLVEEKDNENESWVLNI 391


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 776 NVNHTVD-SDDFEG-DVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQD 624
           N  H+V  S DF   +V++E  + +E  S  +FE    +  T LGF+ S LQD
Sbjct: 5   NTLHSVSISTDFPSPNVESEAADVNEYSSTSKFETLGNQSSTNLGFSNS-LQD 56


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 611 SADEYNDVFGIDEITLYK 558
           S  +Y DV+G+DE+ L++
Sbjct: 312 SISDYTDVYGVDELQLFE 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,905
Number of Sequences: 5004
Number of extensions: 69630
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)