Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a09
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0321 - 7223393-7224751,7225971-7226063,7227801-7227947           31   1.2  
03_06_0653 - 35305279-35306163                                         29   3.6  
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24...    29   4.7  
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644...    28   8.3  
01_05_0537 - 23019590-23020126,23020841-23021022,23021141-230213...    28   8.3  

>09_02_0321 - 7223393-7224751,7225971-7226063,7227801-7227947
          Length = 532

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +1

Query: 58  PTTTKILSAFIHSVCLTEEKQSTSSKTIVNMNKIKVSLKINKCSTIFNFQCNCQNSRH 231
           PT+T++    + ++CL  E  ST S  I N ++   ++  ++CS  F+F C   N RH
Sbjct: 72  PTSTRMADKNLCAICL--EPLSTGSVDIDNGDR--PAIFTSQCSHSFHFLCIASNIRH 125


>03_06_0653 - 35305279-35306163
          Length = 294

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -1

Query: 475 KRRA*AMNSRRSCRTSVLPTSTRRTSIFWSPYLNSPSENNVTS 347
           K+R  A      CRTS  P +TRRT   W P L S  E   +S
Sbjct: 249 KKRNSAAVPSTGCRTSRAPATTRRT---WEPSLPSVEEERESS 288


>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
            246893-247240,247882-248721,248786-248832,249470-249596,
            249672-249836,249973-251370,251453-251713,251802-252161
          Length = 1539

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 758  DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQDPPAA 612
            D D +    Q E    ++ +  P FE+  V+GD  +    S  Q+P  A
Sbjct: 1004 DEDSYTAPCQLEVDSMAQTKEVPSFEISEVQGDGIVVHPISLDQEPSNA 1052


>01_06_0959 -
           33362810-33363125,33363309-33363475,33363583-33364410,
           33364483-33364719,33365455-33365871,33365951-33366412,
           33367197-33367382
          Length = 870

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 530 LHTLCHSIHPYIGLFRQCRTHRYIHQQKLQ 619
           LH + H  HP +  F   R H Y+H  K +
Sbjct: 167 LHNIGHENHPTVLRFYSLRVHDYVHTIKFR 196


>01_05_0537 -
           23019590-23020126,23020841-23021022,23021141-23021377,
           23021460-23021567,23022107-23022257
          Length = 404

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 96  GVFNRRKTKYIIEDHCEYEQNKSFT*NQQMQHNFQFSM*LSKFPPFNLHYCWICSNSIFE 275
           GVFN+     I+ DHC  + +  +  +Q ++   Q S  +    P ++ +   CS    E
Sbjct: 277 GVFNKEIRGRILSDHCYLDIHYMYL-SQSIEAVIQVSTEIDSNDPRHVRFTAFCSGFDRE 335

Query: 276 ILI 284
           IL+
Sbjct: 336 ILL 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,307,694
Number of Sequences: 37544
Number of extensions: 414029
Number of successful extensions: 863
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)