Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18a09
(859 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X75913-1|CAA53512.1| 282|Homo sapiens gCIq-R protein. 86 2e-16
M69039-1|AAA73055.1| 278|Homo sapiens protein ( Human pre-mRNA ... 86 2e-16
L04636-1|AAA16315.1| 282|Homo sapiens splicing factor protein. 86 2e-16
DQ372108-1|ABC79624.1| 282|Homo sapiens complement component 1,... 86 2e-16
BT019899-1|AAV38702.1| 282|Homo sapiens complement component 1,... 86 2e-16
BT019898-1|AAV38701.1| 282|Homo sapiens complement component 1,... 86 2e-16
BC013731-1|AAH13731.1| 282|Homo sapiens complement component 1,... 86 2e-16
BC000435-1|AAH00435.1| 282|Homo sapiens complement component 1,... 86 2e-16
AF338439-1|AAK26580.1| 282|Homo sapiens gC1qR/p32 protein. 86 2e-16
AF275902-1|AAF78763.1| 197|Homo sapiens hyaluronan-binding prot... 86 2e-16
AB014567-1|BAA31642.1| 1111|Homo sapiens KIAA0667 protein protein. 32 3.1
M17754-1|AAA51838.1| 395|Homo sapiens BN51T protein. 31 7.1
CR541803-1|CAG46602.1| 398|Homo sapiens POLR3D protein. 31 7.1
CR536509-1|CAG38747.1| 398|Homo sapiens POLR3D protein. 31 7.1
BC004484-1|AAH04484.1| 398|Homo sapiens polymerase (RNA) III (D... 31 7.1
BC002603-1|AAH02603.1| 398|Homo sapiens polymerase (RNA) III (D... 31 7.1
AY092086-1|AAM18216.1| 398|Homo sapiens RNA polymerase III 53 k... 31 7.1
>X75913-1|CAA53512.1| 282|Homo sapiens gCIq-R protein.
Length = 282
Score = 85.8 bits (203), Expect = 2e-16
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Frame = -3
Query: 854 GFTVKGDGAEVVLTKQLKDETIRVTFNVNHTV----DSDDFEGDVQTEKQEFSEMRSKPQ 687
G+ ++ +G E L +++ E I VTFN+N+++ D ++ Q +++ E+ S P
Sbjct: 108 GWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPN 167
Query: 686 FEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY---KGEWNDKVYAVA 525
F V++++ D L C Y +D + +D+F I E++ + EW D Y +
Sbjct: 168 FVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLN 227
Query: 524 XXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
LM+ L ++G+ N FA +L + STA EH YI LE + F
Sbjct: 228 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSF 278
>M69039-1|AAA73055.1| 278|Homo sapiens protein ( Human pre-mRNA
splicing factor SF2p32, complete sequence. ).
Length = 278
Score = 85.8 bits (203), Expect = 2e-16
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Frame = -3
Query: 854 GFTVKGDGAEVVLTKQLKDETIRVTFNVNHTV----DSDDFEGDVQTEKQEFSEMRSKPQ 687
G+ ++ +G E L +++ E I VTFN+N+++ D ++ Q +++ E+ S P
Sbjct: 104 GWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPN 163
Query: 686 FEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY---KGEWNDKVYAVA 525
F V++++ D L C Y +D + +D+F I E++ + EW D Y +
Sbjct: 164 FVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLN 223
Query: 524 XXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
LM+ L ++G+ N FA +L + STA EH YI LE + F
Sbjct: 224 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSF 274
>L04636-1|AAA16315.1| 282|Homo sapiens splicing factor protein.
Length = 282
Score = 85.8 bits (203), Expect = 2e-16
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Frame = -3
Query: 854 GFTVKGDGAEVVLTKQLKDETIRVTFNVNHTV----DSDDFEGDVQTEKQEFSEMRSKPQ 687
G+ ++ +G E L +++ E I VTFN+N+++ D ++ Q +++ E+ S P
Sbjct: 108 GWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPN 167
Query: 686 FEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY---KGEWNDKVYAVA 525
F V++++ D L C Y +D + +D+F I E++ + EW D Y +
Sbjct: 168 FVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLN 227
Query: 524 XXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
LM+ L ++G+ N FA +L + STA EH YI LE + F
Sbjct: 228 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSF 278
>DQ372108-1|ABC79624.1| 282|Homo sapiens complement component 1, q
subcomponent binding protein protein.
Length = 282
Score = 85.8 bits (203), Expect = 2e-16
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Frame = -3
Query: 854 GFTVKGDGAEVVLTKQLKDETIRVTFNVNHTV----DSDDFEGDVQTEKQEFSEMRSKPQ 687
G+ ++ +G E L +++ E I VTFN+N+++ D ++ Q +++ E+ S P
Sbjct: 108 GWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPN 167
Query: 686 FEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY---KGEWNDKVYAVA 525
F V++++ D L C Y +D + +D+F I E++ + EW D Y +
Sbjct: 168 FVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLN 227
Query: 524 XXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
LM+ L ++G+ N FA +L + STA EH YI LE + F
Sbjct: 228 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSF 278
>BT019899-1|AAV38702.1| 282|Homo sapiens complement component 1, q
subcomponent binding protein protein.
Length = 282
Score = 85.8 bits (203), Expect = 2e-16
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Frame = -3
Query: 854 GFTVKGDGAEVVLTKQLKDETIRVTFNVNHTV----DSDDFEGDVQTEKQEFSEMRSKPQ 687
G+ ++ +G E L +++ E I VTFN+N+++ D ++ Q +++ E+ S P
Sbjct: 108 GWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPN 167
Query: 686 FEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY---KGEWNDKVYAVA 525
F V++++ D L C Y +D + +D+F I E++ + EW D Y +
Sbjct: 168 FVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLN 227
Query: 524 XXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
LM+ L ++G+ N FA +L + STA EH YI LE + F
Sbjct: 228 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSF 278
>BT019898-1|AAV38701.1| 282|Homo sapiens complement component 1, q
subcomponent binding protein protein.
Length = 282
Score = 85.8 bits (203), Expect = 2e-16
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Frame = -3
Query: 854 GFTVKGDGAEVVLTKQLKDETIRVTFNVNHTV----DSDDFEGDVQTEKQEFSEMRSKPQ 687
G+ ++ +G E L +++ E I VTFN+N+++ D ++ Q +++ E+ S P
Sbjct: 108 GWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPN 167
Query: 686 FEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY---KGEWNDKVYAVA 525
F V++++ D L C Y +D + +D+F I E++ + EW D Y +
Sbjct: 168 FVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLN 227
Query: 524 XXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
LM+ L ++G+ N FA +L + STA EH YI LE + F
Sbjct: 228 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSF 278
>BC013731-1|AAH13731.1| 282|Homo sapiens complement component 1, q
subcomponent binding protein protein.
Length = 282
Score = 85.8 bits (203), Expect = 2e-16
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Frame = -3
Query: 854 GFTVKGDGAEVVLTKQLKDETIRVTFNVNHTV----DSDDFEGDVQTEKQEFSEMRSKPQ 687
G+ ++ +G E L +++ E I VTFN+N+++ D ++ Q +++ E+ S P
Sbjct: 108 GWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPN 167
Query: 686 FEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY---KGEWNDKVYAVA 525
F V++++ D L C Y +D + +D+F I E++ + EW D Y +
Sbjct: 168 FVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLN 227
Query: 524 XXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
LM+ L ++G+ N FA +L + STA EH YI LE + F
Sbjct: 228 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSF 278
>BC000435-1|AAH00435.1| 282|Homo sapiens complement component 1, q
subcomponent binding protein protein.
Length = 282
Score = 85.8 bits (203), Expect = 2e-16
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Frame = -3
Query: 854 GFTVKGDGAEVVLTKQLKDETIRVTFNVNHTV----DSDDFEGDVQTEKQEFSEMRSKPQ 687
G+ ++ +G E L +++ E I VTFN+N+++ D ++ Q +++ E+ S P
Sbjct: 108 GWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPN 167
Query: 686 FEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY---KGEWNDKVYAVA 525
F V++++ D L C Y +D + +D+F I E++ + EW D Y +
Sbjct: 168 FVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLN 227
Query: 524 XXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
LM+ L ++G+ N FA +L + STA EH YI LE + F
Sbjct: 228 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSF 278
>AF338439-1|AAK26580.1| 282|Homo sapiens gC1qR/p32 protein.
Length = 282
Score = 85.8 bits (203), Expect = 2e-16
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Frame = -3
Query: 854 GFTVKGDGAEVVLTKQLKDETIRVTFNVNHTV----DSDDFEGDVQTEKQEFSEMRSKPQ 687
G+ ++ +G E L +++ E I VTFN+N+++ D ++ Q +++ E+ S P
Sbjct: 108 GWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPN 167
Query: 686 FEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY---KGEWNDKVYAVA 525
F V++++ D L C Y +D + +D+F I E++ + EW D Y +
Sbjct: 168 FVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLN 227
Query: 524 XXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
LM+ L ++G+ N FA +L + STA EH YI LE + F
Sbjct: 228 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSF 278
>AF275902-1|AAF78763.1| 197|Homo sapiens hyaluronan-binding protein
precursor protein.
Length = 197
Score = 85.8 bits (203), Expect = 2e-16
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Frame = -3
Query: 854 GFTVKGDGAEVVLTKQLKDETIRVTFNVNHTV----DSDDFEGDVQTEKQEFSEMRSKPQ 687
G+ ++ +G E L +++ E I VTFN+N+++ D ++ Q +++ E+ S P
Sbjct: 23 GWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPN 82
Query: 686 FEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY---KGEWNDKVYAVA 525
F V++++ D L C Y +D + +D+F I E++ + EW D Y +
Sbjct: 83 FVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLN 142
Query: 524 XXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
LM+ L ++G+ N FA +L + STA EH YI LE + F
Sbjct: 143 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSF 193
>AB014567-1|BAA31642.1| 1111|Homo sapiens KIAA0667 protein protein.
Length = 1111
Score = 31.9 bits (69), Expect = 3.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 770 NHTVDSDDFEGDVQTEKQEFSEMRSKPQFEVD 675
N+ DSD+ E ++TE EFSE S+ ++ D
Sbjct: 212 NYNYDSDEDEEQMETEDSEFSEQESEDEYSDD 243
>M17754-1|AAA51838.1| 395|Homo sapiens BN51T protein.
Length = 395
Score = 30.7 bits (66), Expect = 7.1
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -3
Query: 845 VKGDGAEVVLTKQLKDETIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFEVDLVR 666
V+G+ +VVL KQ KD ++ N D EG V + + Q + V
Sbjct: 288 VQGEDGQVVLIKQEKDREAKLAENACTLADLT--EGQVG---KLLIRKSGRVQLLLGKVT 342
Query: 665 GDTTLGFTCSYLQD 624
D T+G CS+LQ+
Sbjct: 343 LDVTMGTACSFLQE 356
>CR541803-1|CAG46602.1| 398|Homo sapiens POLR3D protein.
Length = 398
Score = 30.7 bits (66), Expect = 7.1
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -3
Query: 845 VKGDGAEVVLTKQLKDETIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFEVDLVR 666
V+G+ +VVL KQ KD ++ N D EG V + + Q + V
Sbjct: 291 VQGEDGQVVLIKQEKDREAKLAENACTLADLT--EGQVG---KLLIRKSGRVQLLLGKVT 345
Query: 665 GDTTLGFTCSYLQD 624
D T+G CS+LQ+
Sbjct: 346 LDVTMGTACSFLQE 359
>CR536509-1|CAG38747.1| 398|Homo sapiens POLR3D protein.
Length = 398
Score = 30.7 bits (66), Expect = 7.1
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -3
Query: 845 VKGDGAEVVLTKQLKDETIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFEVDLVR 666
V+G+ +VVL KQ KD ++ N D EG V + + Q + V
Sbjct: 291 VQGEDGQVVLIKQEKDREAKLAENACTLADLT--EGQVG---KLLIRKSGRVQLLLGKVT 345
Query: 665 GDTTLGFTCSYLQD 624
D T+G CS+LQ+
Sbjct: 346 LDVTMGTACSFLQE 359
>BC004484-1|AAH04484.1| 398|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide D, 44kDa protein.
Length = 398
Score = 30.7 bits (66), Expect = 7.1
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -3
Query: 845 VKGDGAEVVLTKQLKDETIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFEVDLVR 666
V+G+ +VVL KQ KD ++ N D EG V + + Q + V
Sbjct: 291 VQGEDGQVVLIKQEKDREAKLAENACTLADLT--EGQVG---KLLIRKSGRVQLLLGKVT 345
Query: 665 GDTTLGFTCSYLQD 624
D T+G CS+LQ+
Sbjct: 346 LDVTMGTACSFLQE 359
>BC002603-1|AAH02603.1| 398|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide D, 44kDa protein.
Length = 398
Score = 30.7 bits (66), Expect = 7.1
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -3
Query: 845 VKGDGAEVVLTKQLKDETIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFEVDLVR 666
V+G+ +VVL KQ KD ++ N D EG V + + Q + V
Sbjct: 291 VQGEDGQVVLIKQEKDREAKLAENACTLADLT--EGQVG---KLLIRKSGRVQLLLGKVT 345
Query: 665 GDTTLGFTCSYLQD 624
D T+G CS+LQ+
Sbjct: 346 LDVTMGTACSFLQE 359
>AY092086-1|AAM18216.1| 398|Homo sapiens RNA polymerase III 53 kDa
subunit RPC4 protein.
Length = 398
Score = 30.7 bits (66), Expect = 7.1
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -3
Query: 845 VKGDGAEVVLTKQLKDETIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFEVDLVR 666
V+G+ +VVL KQ KD ++ N D EG V + + Q + V
Sbjct: 291 VQGEDGQVVLIKQEKDREAKLAENACTLADLT--EGQVG---KLLIRKSGRVQLLLGKVT 345
Query: 665 GDTTLGFTCSYLQD 624
D T+G CS+LQ+
Sbjct: 346 LDVTMGTACSFLQE 359
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,891,590
Number of Sequences: 237096
Number of extensions: 2397435
Number of successful extensions: 6822
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6801
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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