Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a09
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical pr...    73   3e-13
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    33   0.20 
AF022978-6|AAG24184.1|  357|Caenorhabditis elegans Seven tm rece...    31   1.1  
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL032651-2|CAB60579.1|  272|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical
           protein F59A2.3 protein.
          Length = 236

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
 Frame = -3

Query: 854 GFTVKGDGAEVVLTKQLKDETIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMR-SKPQFEV 678
           GF V    AEV LTK+   E I V FNVNH+VD D  EG      Q  + +  + P F V
Sbjct: 71  GFQVTNKDAEVRLTKKNGSEDILVVFNVNHSVDMD--EGFDDEPSQAVAPVPVAMPPFTV 128

Query: 677 DLVRGDTTLGFTCSYLQDPPAASADEYNDVFGIDEITLYKGEWN------DKVYAVA-XX 519
           ++ +GD  L F    +  P     DEY+  F ++E  +     N       +VYA +   
Sbjct: 129 EITKGDQRLCFHLELV--PVDDQPDEYD--FRVEEFYVAPSAKNGNEDVPSEVYASSGKY 184

Query: 518 XXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
                     +  LEE+G+   F + L  ++T YEH+ Y+ LL+ I KF
Sbjct: 185 IDPDLHDLLFVRYLEERGLDARFCKTLVAYATHYEHSQYVGLLDKIKKF 233


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +1

Query: 100 CLTEEKQSTSSKTIVNMNKIKVSLKINKCSTIFNFQCNCQNSRHLICTIVGSVA 261
           C T E+  T+S T  N   IK++L IN      N    C  S H  C   G+ A
Sbjct: 177 CATNEQLPTTSSTSTNAPTIKITLNINDAYFDSNCAPKCTQSCHSQCISQGNPA 230


>AF022978-6|AAG24184.1|  357|Caenorhabditis elegans Seven tm
           receptor protein 196 protein.
          Length = 357

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/91 (28%), Positives = 44/91 (48%)
 Frame = +1

Query: 121 STSSKTIVNMNKIKVSLKINKCSTIFNFQCNCQNSRHLICTIVGSVAIRFSKF*LFTELA 300
           S S   +VNM+ I +      C   F   C    S+ L  T   S A +  +  LF  L 
Sbjct: 202 SLSFNGVVNMDLI-LGTSFG-CVAYFGINCYRLISQKLSTTESLSQATKNLQLQLFYALI 259

Query: 301 NKNKI*CLYVI*NFSLKLHYFPMVNLDMDSR 393
            ++ I C+++    ++ +  FPM+N+D+DS+
Sbjct: 260 VQSAIPCMFMYIPAAI-IFTFPMINIDLDSK 289


>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical protein
            B0412.3 protein.
          Length = 1107

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +1

Query: 28   LKAVLAQKLPPTTTKILSAFIHSVCLTEEKQSTSSKTIVNMNKIKVSLKINKCSTIFN 201
            L+  L+ K+      +  + +  V +T ++  T + T++NMN I ++  +N C  I N
Sbjct: 836  LQLELSYKISEDGILVTKSTMLEVGVTAKEPFTVTSTVMNMNGIPMTSILNNCDHILN 893


>AL032651-2|CAB60579.1|  272|Caenorhabditis elegans Hypothetical
           protein Y6D1A.2 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/83 (21%), Positives = 36/83 (43%)
 Frame = -3

Query: 821 VLTKQLKDETIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFT 642
           ++ + L +    ++ NV H VD+D F+ +++ E  E   +R +   +   V+      F 
Sbjct: 65  IINQSLTESLRNISANVRHRVDADSFKIELKREAMEKFHIRVELLAQCAKVKELERDKFQ 124

Query: 641 CSYLQDPPAASADEYNDVFGIDE 573
            SY         +  N +  +DE
Sbjct: 125 LSYQMQELRTIGEHQNLIKMVDE 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,096,449
Number of Sequences: 27780
Number of extensions: 400319
Number of successful extensions: 1113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)