Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a08
         (808 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-6|CAA86666.1|  503|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine re...    29   5.2  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z82084-1|CAB04978.1|  398|Caenorhabditis elegans Hypothetical pr...    28   9.0  
Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical pr...    28   9.0  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    28   9.0  

>Z46676-6|CAA86666.1|  503|Caenorhabditis elegans Hypothetical
           protein C08B11.8 protein.
          Length = 503

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -3

Query: 239 FYHFLVVYNYNVIKLINHLIDINKILQFLFHDLKVYTFNPWKFLHSIPCAIFMYVCMYF 63
           F +F+V Y Y   + I+H++ I  ++ F    L++Y  +  +F H    A   + C++F
Sbjct: 429 FAYFVVSYAYTAPRKISHILTI--LIGFAICILELYGPSNQRFPHIYQLANAFFSCVHF 485


>AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein9 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 248 IKTFYHFLVVYNYNVIKLINHLIDINKILQFLFHDLKVYTFNPWKFLHS--IPCAIFMYV 75
           +  F+ F+ +  + +  L+   + IN+ L   F++  ++TFN    + +  I  A+F   
Sbjct: 82  LSVFFGFIFLSGWFMENLLQPTMAINRFLVITFNNHNIFTFNKTMLMMTVLISAALFSAA 141

Query: 74  CMYF 63
           C  +
Sbjct: 142 CAQY 145


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 91  LFSCMYVCILEISSIQQFYIHLLLI 17
           LF C + C+L++++     IHL+LI
Sbjct: 59  LFVCYFYCVLDVAASTSSIIHLVLI 83


>Z82084-1|CAB04978.1|  398|Caenorhabditis elegans Hypothetical
           protein ZK1053.1 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 182 LNG*LILLHYNCKLPGNDKMF*SR--NSSIH-KFFQYLSTFN 298
           LNG  I   Y+ KLP NDK F  R  N+S++ +F    ST+N
Sbjct: 170 LNGMNISASYSEKLPKNDKYFEFRVFNTSLYPEFVSNWSTYN 211


>Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical
           protein T22C1.3 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
 Frame = -3

Query: 260 WNFLIKTFYHFLVVYNYNVIKL-------INHLIDINKILQFLFHDLKVYTFNPWKFLHS 102
           W F ++ F HF   Y  + + L       I  LI  + IL F      V  F P+  L+ 
Sbjct: 263 WYFFVQIFEHFRSFYTMSFVVLYFFMPIPITFLIRKDTILHFTIIGFLVSIFFPYPTLNQ 322

Query: 101 IPCAI-FMYV-CMYFGNFQYSAILYSPVIN 18
           +   + F+ V  +Y  +F+Y+ ++   +++
Sbjct: 323 VSLLLAFLPVHDVYKKHFRYTILIAGTIVS 352


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 215  NYNVIKLINHLIDINKILQFLFHDLKVYTFNPWKFLHSIP 96
            ++  IKL NH I++N I Q +    ++ + +P++   SIP
Sbjct: 1298 DFKKIKLPNHFINLNHIQQRILFLSRMTSSDPFRLEFSIP 1337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,416,201
Number of Sequences: 27780
Number of extensions: 363724
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)