Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a05
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    31   0.17 
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    27   2.8  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   2.8  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   4.9  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.5  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 14/56 (25%), Positives = 33/56 (58%)
 Frame = -3

Query: 306 LMLTILMQMPLVSFFLFHPYLLSTPTEITLHAMFWMTTIIEIVYGFRALKQASSLA 139
           + ++I   + ++     +PY++++ T + L A+F++T +I + + FRA    S L+
Sbjct: 394 IFVSIFDTLTVLLLTWINPYVINSHTGLIL-ALFYLTNLIALAFSFRAAATHSKLS 448


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +2

Query: 191 IVVIQNIACSVISVGVLSKYG*KRKKLTSGICIKIVNMRNTANSGTLQDKFPYLPRY 361
           I ++Q++   V+  G+ +K   + +    G C K+ +  N A+  T  D   Y P Y
Sbjct: 496 IALVQSV---VVPCGITNKTTDQERNEIEGFCSKLADRLNAADIRTEADLRAYTPGY 549


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = -3

Query: 393 LLLSGIEIVRLYLGRYGNLSCRVPELAVFLMLTILMQMPLVSFFLFHPYLLSTPTEITLH 214
           LL + +  +  Y+      +   PE+ +FL   IL      +F +  PY     T I  +
Sbjct: 406 LLNAPVSAISAYISIVQKPNIAFPEIILFLWQAILYNKRFRAFLITSPYATEFLTSIQFY 465

Query: 213 AM 208
           A+
Sbjct: 466 AL 467


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 178 HNLNNSSHPKHSMQRYFCWCTQQIWMKKEEA 270
           H L++ + P   ++++ C C  Q+W    EA
Sbjct: 625 HCLSHLNSPDSLLRQWACLCISQLWENYSEA 655


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 459 TTIFQKFDQLSHLTKYLSATVFLLLSGIEIVRL 361
           T    K  ++  L++YLS+T+FL L    IV L
Sbjct: 279 TLFISKLFEIPSLSEYLSSTLFLDLQAFCIVAL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,802
Number of Sequences: 5004
Number of extensions: 43376
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)