Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a04
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    28   1.7  
SPBC119.18 |||mitochondrial distribution and morphology protein ...    26   5.2  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    26   6.9  

>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -2

Query: 712 VITTAITLSVQWANS---KAAIVSLFAIDTAVGQV-LLSLNQALTVELFPTTTRTLAISM 545
           +ITTA  +S++ AN    K+    L  +D     V LLSL   +    FP  ++T     
Sbjct: 190 LITTAEGISLERANEMLRKSKKGKLPVVDKDDNLVALLSLTDLMKNLHFPLASKTSDTKQ 249

Query: 544 IMVAGRIGT 518
           +MVA  IGT
Sbjct: 250 LMVAAAIGT 258


>SPBC119.18 |||mitochondrial distribution and morphology protein
           Mdm35 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 69

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 617 NLTHSCIDSKKRYDRCFGIGPLNA*SYGCSDHASCDQ 727
           +++  C  +KK+YD CF     N    G   +  CD+
Sbjct: 4   SVSEECTPAKKKYDACFNDWYANKFLKGDLHNRDCDE 40


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 485 KENRERHIRC*GTDPPSHHYH-RNSQRSSSCRKQL 586
           +E++E  +   GTD P  +YH  N +++  C + L
Sbjct: 421 EESKEPSVPLMGTDQPLENYHDGNGEQTEECLRDL 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,413,823
Number of Sequences: 5004
Number of extensions: 74224
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)