Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18a04
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1053 - 22575281-22575409,22575516-22575653,22575786-225758... 39 0.005
07_03_0896 + 22373348-22374946 39 0.005
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 38 0.009
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 36 0.027
01_03_0126 + 12741397-12743022 34 0.11
07_03_0899 + 22421038-22422642 33 0.19
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161... 33 0.19
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 33 0.19
09_04_0120 + 14836644-14836949,14837038-14837664,14837916-14838359 33 0.25
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 33 0.33
02_05_1340 + 35797923-35799881 33 0.33
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 32 0.44
11_04_0293 + 15926561-15928834 32 0.58
08_02_0707 - 20212190-20214592 32 0.58
03_05_0199 - 21893051-21893509,21893835-21894482,21894566-218948... 32 0.58
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 31 0.77
11_01_0208 - 1628020-1628117,1628282-1628325,1628790-1628878,162... 31 0.77
12_01_0209 - 1583401-1583498,1583879-1583922,1584285-1584373,158... 31 1.0
04_04_1601 + 34707975-34708209,34708598-34709970 31 1.3
10_08_0784 + 20529526-20529604,20529996-20530562,20530687-205316... 30 1.8
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 30 1.8
02_02_0155 + 7272563-7272630,7272934-7273031,7273491-7274057,727... 30 1.8
07_03_0898 - 22403337-22404950 30 2.4
05_06_0022 + 24988363-24988453,24989102-24989325,24989433-249894... 29 3.1
01_06_1046 + 34087867-34089402 29 4.1
09_02_0430 - 9313768-9314259,9314347-9315299,9316875-9317022 28 7.2
05_01_0486 - 4047055-4049013 28 7.2
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 28 7.2
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 28 7.2
11_01_0211 - 1660249-1660352,1660504-1660547,1660893-1660934,166... 28 9.5
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 28 9.5
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498... 28 9.5
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 28 9.5
>10_08_1053 -
22575281-22575409,22575516-22575653,22575786-22575884,
22576281-22576361,22577171-22577233,22577473-22577520,
22577622-22577990,22578082-22578183,22578290-22578414,
22578500-22578566,22578817-22578895,22578928-22579079,
22579182-22579223
Length = 497
Score = 38.7 bits (86), Expect = 0.005
Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Frame = -2
Query: 769 VSGVIVNRVGKKPLLI--AAGVITTAITLSVQWANSK-AAIVSLFAIDTAVGQVLLS--- 608
V+ ++V+R+G++PLLI +G+ + LS + K A V++ A+ VG LS
Sbjct: 355 VAVLVVDRLGRRPLLIGGVSGIAVSLFLLSSYYTLLKDAPYVAVIALLLYVGCYQLSFGP 414
Query: 607 LNQALTVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLLDM-GCGVPFFTLTGMVMCV 431
+ + E+FP R +S+ ++ AF L D+ G G+ F+ G++
Sbjct: 415 IGWLMISEVFPLRLRGRGLSIAVLVNFASNALVTFAFSPLEDLIGTGI-LFSAFGVIAVA 473
Query: 430 TAISLF 413
+ + +F
Sbjct: 474 SLVFIF 479
>07_03_0896 + 22373348-22374946
Length = 532
Score = 38.7 bits (86), Expect = 0.005
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = -2
Query: 763 GVIVNRVGKKPLLIAAGVITTAITLSVQWANSKAA--IVSLFAIDTAVGQVLLSLNQALT 590
G I R L AAGV + A + + A ++S FA TA +L+ +
Sbjct: 385 GRINRRSSVVALTAAAGVCSLACVAIPEGTGGRMAAEVLSFFATCTAFNIILM-----YS 439
Query: 589 VELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLLDMGCGVPFFTLTGMVMCVTAISLF 413
+ELFPT+ R A+ M+ A +G VA P+L+ +G F++ + V + LF
Sbjct: 440 IELFPTSVRNSAVGMVRQALVLG----GVAAPMLVALGRERSFWSFGVFGLAVGCLGLF 494
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 37.9 bits (84), Expect = 0.009
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = -2
Query: 769 VSGVIVNRVGKKPLLIAAGVITTAITLSVQWANSKAAIVSLFAIDTAVGQ---VLLSLNQ 599
V G + +R G K ++ A + + T WA S++ I+ L AI G V
Sbjct: 178 VGGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIM-LLAIRALFGLAEGVAFPTMS 236
Query: 598 ALTVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLL 485
+ FPT R A+ + M +G + + +A P+++
Sbjct: 237 TFLPKWFPTHERATAVGISMGGFHLGNVISFLATPIIM 274
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 36.3 bits (80), Expect = 0.027
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Frame = -2
Query: 769 VSGVIVNRVGKKPLLIA----AGVITTAITLSVQWANSKAAIVSLFAIDTAVGQVLLSLN 602
++ ++++R G+KPL I +G+ +A +L + A ++ + +L
Sbjct: 378 LTALLLDRFGRKPLAIGTMLLSGISCSAGSLIAGAGAMRVARLACGVVGIFGMAATYNLL 437
Query: 601 QALTVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLLDMGCGVPF--FTLTGMV 440
T ELFPT R A+ A ++G + A P+++ +G VPF F ++G+V
Sbjct: 438 FIYTAELFPTAVRNAALGCTSQASQMGAILA----PLVVVLGERVPFALFGVSGLV 489
>01_03_0126 + 12741397-12743022
Length = 541
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = -2
Query: 676 ANSKAAIVSLFAIDTAVGQVLLSLNQALTVELFPTTTRTLAISMIMVAGRIGTLTANVAF 497
A A + S FA TA +L+ T+ELFPT+ R A+ ++ A +G + A
Sbjct: 421 ARMAAEVASFFASCTAYDMMLM-----YTIELFPTSVRNSAVGLVRQAVALGGVVA---- 471
Query: 496 PVLLDMG 476
PVL+ +G
Sbjct: 472 PVLVALG 478
>07_03_0899 + 22421038-22422642
Length = 534
Score = 33.5 bits (73), Expect = 0.19
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = -2
Query: 664 AAIVSLFAIDTAVGQVLLSLNQALTVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLL 485
A + S FA A +L+ ++ELFPT+ R A+ ++ AG +G + A P+L+
Sbjct: 431 AELASFFASCAAYDVLLM-----YSIELFPTSVRNSAVGLVRQAGVLGGVVA----PMLV 481
Query: 484 DMGCGVPF--FTLTGM-VMCVTAISLFLPSAK 398
+G + F + G+ V C+ FLP K
Sbjct: 482 ALGRERSYWSFGVFGLTVGCLGLFVTFLPETK 513
>03_01_0204 +
1611837-1611840,1611926-1612048,1614570-1614659,
1615529-1616095,1616235-1616959,1617065-1617252,
1617331-1617778
Length = 714
Score = 33.5 bits (73), Expect = 0.19
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = -2
Query: 769 VSGVIVNRVGKKPLLIAAGVITTAITLSVQWANSKAAIVSLFAIDTAVGQVLLSLNQALT 590
+SG+I N +GK+PLL A ++ +I+ + + S ++ L + G L+ L
Sbjct: 108 LSGMITNSIGKRPLLSVAAIL-YSISALIMFQASNEYMLLLARLIYGFGSGLVVTYAPLY 166
Query: 589 V-ELFPTTTRTLAISMIMVAGRIGTLTANV 503
+ E PT R L ++ G +G L + +
Sbjct: 167 ISETAPTNMRGLLNTLPQFNGSLGMLLSYI 196
Score = 29.1 bits (62), Expect = 4.1
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Frame = -2
Query: 754 VNRVGKKPLL---IAAGVITTAITLSVQWANSKA---AIVSLFAIDTAVGQVLLSLN--- 602
++R G++ LL I +++ I + V N +A AI+S F + V ++
Sbjct: 560 MDRYGRRSLLLYTIPMLIVSLIILIVVNVMNLEAIFGAILSTFGVIIYVCCFVMGFGPIP 619
Query: 601 QALTVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLLDMGCGVPFFTLTGMVMCVTAI 422
L ELFP + R +S+ + I ++ AFPV+L G+ V+C+ +
Sbjct: 620 NVLCSELFPPSCRNRCMSICTLTFWIVSIIVTYAFPVMLS-SIGLIGVCGIYAVVCIVSF 678
Query: 421 SLFLPSAKK*LGYPV 377
L + G P+
Sbjct: 679 IFVLIKVPETKGMPL 693
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 33.5 bits (73), Expect = 0.19
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Frame = -2
Query: 769 VSGVIVNRVGKKPLLIAAGVITTAITLSVQWANSKAAIVSLFA---IDTAVGQVLLSLNQ 599
+ G +V+ G K ++ + + T WA +++ + L + A G L S+N
Sbjct: 153 IGGALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNN 212
Query: 598 ALTVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLLD-MGCGVPF--FTLTGMVMCVT 428
+ + FP T R+ A+ + M ++G + P+++ G PF F L G + +
Sbjct: 213 -MVLRWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLV 271
Query: 427 AIS 419
IS
Sbjct: 272 WIS 274
>09_04_0120 + 14836644-14836949,14837038-14837664,14837916-14838359
Length = 458
Score = 33.1 bits (72), Expect = 0.25
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Frame = -2
Query: 754 VNRVGKKPLLIAAGV------ITTAITLSVQWANSK--------AAIVSLFAIDTAVGQV 617
V+R+G++ LLI+ G+ + A+ L V++ K A +V + A G
Sbjct: 291 VDRLGRRKLLISGGIQMIICQVIVAVILGVKFGTDKELTRSYSIAVVVVICLFVLAFGWS 350
Query: 616 LLSLNQALTVELFPTTTRTLAISMIMVAGRIGTLTANVAF-PVLLDMGCGVPFFTLTGMV 440
L + E+FP TR+ S+ + T AF +L + G+ F +
Sbjct: 351 WGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQAFLSLLCALKFGIFLFFAGWIT 410
Query: 439 MCVTAISLFLPSAK 398
+ + +FLP K
Sbjct: 411 VMTVFVHVFLPETK 424
>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
Length = 476
Score = 32.7 bits (71), Expect = 0.33
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Frame = -2
Query: 769 VSGVIVNRVGKKPLLIAA--GVITTAITL-------SVQWANSKAAIVSLFAIDTAVGQV 617
V+ ++ +R+G++PLL+A+ GV T +L S A++ A + S+ A A
Sbjct: 329 VATLLSDRLGRRPLLLASTGGVAVTLTSLALALRVASPSTASAAACVASVMAFVAAFSVG 388
Query: 616 LLSLNQALTVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLLDMGCGVP----FFTLT 449
+ T E+ P R S+ M R LT V + + G+ FF
Sbjct: 389 FGPMTATYTAEIMPLRLRAQGASLGMAVNR---LTCGVVSMTFISLAGGITMAGCFFLYA 445
Query: 448 GM--VMCV 431
G+ V CV
Sbjct: 446 GVAAVACV 453
>02_05_1340 + 35797923-35799881
Length = 652
Score = 32.7 bits (71), Expect = 0.33
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = -2
Query: 733 PLLIAAGVITTAITLSVQWANSKAAIVSLFAIDTAVGQVLL--SLNQALTVELFPTTTRT 560
PLL+A+ + A +++ A + AA+ + + V+ + L E+FPT R
Sbjct: 508 PLLVASLAVLVAASVAPMAAAAHAAVCTGSVVVYLCCFVMGFGPIPNILCAEIFPTRVRG 567
Query: 559 LAISMIMVAGRIGTLTANVAFPVLLDMGCGVPFFTLTGMVMCVTA--ISLFLPSAK 398
L I++ +A + + PV+L F + V CV ++L +P K
Sbjct: 568 LCIAICSLAFWLADIAVTYTLPVMLASLGLAGLFAIYAAVCCVALVFVALRVPETK 623
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 32.3 bits (70), Expect = 0.44
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -2
Query: 769 VSGVIVNRVGKKPLLIAAGVITTAITLSVQWANSKAAI---VSLFAIDTAVGQVLLSLNQ 599
+S +IV+R+G+K L A ++ T+ S+ I VSLF + ++
Sbjct: 389 LSAMIVDRIGRK--LSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARLCIS-ASFTIVY 445
Query: 598 ALTVELFPTTTRTLAISMIMVAGRIG 521
E++PT+ RT I + GRIG
Sbjct: 446 IYAPEIYPTSVRTTGIGVASSVGRIG 471
>11_04_0293 + 15926561-15928834
Length = 757
Score = 31.9 bits (69), Expect = 0.58
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -2
Query: 595 LTVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLLDMGCGVPFFTLTGMVMCVTA--I 422
L E+FPT R L I++ + +G + + PV+L F+ V CV +
Sbjct: 664 LCAEIFPTRVRGLCIAICSLTFWLGDIAVTYSLPVMLSSVGLAGVFSFYAAVCCVALVFV 723
Query: 421 SLFLPSAK 398
+L +P K
Sbjct: 724 ALKVPETK 731
>08_02_0707 - 20212190-20214592
Length = 800
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 425 RSYTHDH---SGQREKWYSAAHIKENRERHIRC*GTDPPSHHYHRNSQ 559
+S+ HDH S E +++ +E H C G D HH+H +S+
Sbjct: 548 KSHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE 595
>03_05_0199 -
21893051-21893509,21893835-21894482,21894566-21894888,
21895978-21896116
Length = 522
Score = 31.9 bits (69), Expect = 0.58
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 607 LNQALTVELFPTTTRTLAISMIMVAGRIGTLTANVAF-PVLLDMGCGVPFFTLTGMVMCV 431
L L E+FP R S+ + + T AF P+L M G+ F+ +G V+ +
Sbjct: 415 LGVLLPSEIFPLEVRPAGQSISVAVNMLCTFAVAEAFLPMLCHMRFGL-FYFFSGWVLVM 473
Query: 430 TA-ISLFLPSAK 398
T +S FLP K
Sbjct: 474 TLFVSAFLPETK 485
>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
Length = 478
Score = 31.5 bits (68), Expect = 0.77
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 15/139 (10%)
Frame = -2
Query: 769 VSGVIVNRVGKKPLLIAA--GVITT----AITLSV----QWANSKAAIVSLFAIDTAVGQ 620
V+ ++ +R+G++PLL+A+ G+ T A+TL V A+S A + S+ A A
Sbjct: 330 VATLLSDRLGRRPLLLASTGGMAVTLTSLALTLRVASPPSTASSAACVASVVAFVAAFSV 389
Query: 619 VLLSLNQALTVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLLD----MGCGVPFFTL 452
L T E+ P R + + R+ + F L D GC FF
Sbjct: 390 GLGPTTATYTAEVMPLRLRAQGTGLGVAVNRLACGAVTMTFISLADGITMAGC---FFLY 446
Query: 451 TGMVMCVTA-ISLFLPSAK 398
G+ + ++LP +
Sbjct: 447 AGVAAAACVFVYVWLPETR 465
>11_01_0208 -
1628020-1628117,1628282-1628325,1628790-1628878,
1628986-1629030,1629397-1629504,1629650-1629735,
1629870-1629957,1630275-1630445,1630718-1630793,
1630877-1630926,1631035-1631097,1631201-1631254,
1631398-1631500,1631626-1631728,1632038-1632098,
1632186-1632226,1632375-1632453
Length = 452
Score = 31.5 bits (68), Expect = 0.77
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Frame = -2
Query: 763 GVIVNRVGKKPLLI----AAGVITTAITLSVQWANSKAAIVSLFAIDTAVGQVLLSLNQA 596
G++ +R+G+KP++I A V+ T LSV++ A+ + F + G LL+ +A
Sbjct: 76 GMVADRIGRKPVIIFSIFAVIVLNTLFGLSVKY---WMAVTTRFLLGALNG--LLAPIKA 130
Query: 595 LTVELFPTTTRTLAISMIMVAGRIG 521
++E+ + L +S++ A IG
Sbjct: 131 YSIEVCRAEHQALGLSIVSTAWGIG 155
>12_01_0209 -
1583401-1583498,1583879-1583922,1584285-1584373,
1584911-1585018,1585158-1585243,1585385-1585472,
1585970-1586140,1586379-1586454,1586534-1586583,
1586692-1586754,1586839-1586892,1587038-1587140,
1587265-1587367,1587479-1587569,1587629-1587669,
1587801-1587879
Length = 447
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Frame = -2
Query: 763 GVIVNRVGKKPLLI----AAGVITTAITLSVQWANSKAAIVSLFAIDTAVGQVLLSLNQA 596
G++ +R+G+KP++I A V+ T LSV++ A+ + F + G LL+ +A
Sbjct: 86 GMVADRIGRKPVIIFSIFAVIVLNTLFGLSVKY---WMAVTTRFLLGALNG--LLAPIKA 140
Query: 595 LTVELFPTTTRTLAISMIMVAGRIG 521
++E+ + L +S++ A IG
Sbjct: 141 YSIEVCRAEHQPLGLSIVSTAWGIG 165
>04_04_1601 + 34707975-34708209,34708598-34709970
Length = 535
Score = 30.7 bits (66), Expect = 1.3
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Frame = -2
Query: 760 VIVNRVGKKPLLI--AAGV------ITTAITLSVQWANSKAAIVSLFAIDTAVGQVLL-- 611
V+V+RVG+KPLL AG+ + +++L A +AA + AI T G V
Sbjct: 365 VLVDRVGRKPLLYVSTAGITACLAALAASLSLLAHGALPRAAAIGA-AILTVCGFVAFFS 423
Query: 610 ----SLNQALTVELFPTTTRTLAISMIMVAGRIGTLTANVAF 497
+N L+ E++P R A+++ R+ + ++F
Sbjct: 424 VGIGPINMVLSSEIYPLRLRAQAVALGFAVNRLTSGAVAMSF 465
>10_08_0784 +
20529526-20529604,20529996-20530562,20530687-20531639,
20532292-20532479,20532578-20533013
Length = 740
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = -2
Query: 766 SGVIVNRVGKKPLLIAAGVITTAITLSVQWANSKAAIVSLFAIDTAVGQVLLSLNQALTV 587
SG + + G++P+LIA+ V+ L + WA + ++ ID + ++L
Sbjct: 63 SGAVADSFGRRPMLIASAVLYFVSGLVMLWAPNVYVLLLARLIDGFGIGLAVTLVPLYIS 122
Query: 586 ELFPTTTRTLAISMIMVAGRIG 521
E PT R L ++ +G G
Sbjct: 123 ETAPTDIRGLLNTLPQFSGSGG 144
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = -2
Query: 595 LTVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLLDMGCGVPFFTLTGMVMCVTAISL 416
L E+FPTT R + I++ + IG + PV+L+ G+ V+C+ A
Sbjct: 652 LCAEIFPTTVRGICIAICALTFWIGDIIVTYTLPVMLN-AIGLAGVFGIYAVVCILAFLF 710
Query: 415 FLPSAKK*LGYPV 377
+ G P+
Sbjct: 711 VFMKVPETKGMPL 723
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 30.3 bits (65), Expect = 1.8
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Frame = -2
Query: 769 VSGVIVNRVGKKPLLI-AAGVITTAITLSVQWANSKAAIVSLFAID-TAVGQVLLSLNQA 596
VS V V+++G++ LL+ A G + A AIV L + ++ L
Sbjct: 344 VSIVAVDKIGRRRLLLQACGQMLIAQANGNPGEKWAVAIVVLICVYVSSFAWSWGPLGWL 403
Query: 595 LTVELFPTTTRTLAISMIMVAGRIGT-LTANVAFPVLLDMGCGVPFFTLTGMVMCVTAIS 419
+ E FP TRT S + + + T L A ++ M + FF +V+ +
Sbjct: 404 IPSETFPLATRTTGFSFAVSSNMLFTFLIAQAFLSMMCSMKAFIFFFFAIWIVIMAAFVF 463
Query: 418 LFLPSAK 398
LP K
Sbjct: 464 WLLPETK 470
>02_02_0155 +
7272563-7272630,7272934-7273031,7273491-7274057,
7275121-7276085,7276201-7276388,7276497-7276938
Length = 775
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Frame = -2
Query: 769 VSGVIVNRVGKKPLLIAAGVI---TTAITLSVQWANSKAAIVSLFAIDTAVGQVLLSLNQ 599
+SG +G P+LIA+ V+ + I L A++ + +S+ +
Sbjct: 625 ISGRRFLLLGTIPVLIASLVVLVVSNVIDLGTV-AHAALSTISVIIYFCCFVMGFGPIPN 683
Query: 598 ALTVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLLDMGCGVPFFTLTGMVMCVTAIS 419
L E+FPT R + I++ + IG + + PV+L+ F + +V + +
Sbjct: 684 ILCAEIFPTRVRGICIAICALTFWIGDIIVTYSLPVMLNAIGLAGVFGIYAVVCSIAFVF 743
Query: 418 LFL 410
+FL
Sbjct: 744 VFL 746
>07_03_0898 - 22403337-22404950
Length = 537
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/85 (25%), Positives = 42/85 (49%)
Frame = -2
Query: 664 AAIVSLFAIDTAVGQVLLSLNQALTVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLL 485
A + S FA A +L+ ++ELFPT+ R A+ ++ A +G + A P+L+
Sbjct: 421 AELASFFASCAAFDVMLM-----YSIELFPTSVRNSAVGLVRKAAVLGGVVA----PMLV 471
Query: 484 DMGCGVPFFTLTGMVMCVTAISLFL 410
+G +++ + V + LF+
Sbjct: 472 ALGRERSYWSFGVFGLAVGCLGLFV 496
>05_06_0022 +
24988363-24988453,24989102-24989325,24989433-24989494,
24990219-24990440,24990740-24990869,24991373-24991698,
24991910-24992051,24992169-24992414
Length = 480
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 147 VHRMKKVGHLIPRVCNFTRGRKCPTFLPWCTIYYFFYIKNK 269
VH M++ H + R F +CP CT+ Y + KNK
Sbjct: 20 VHEMERFSHYVARQIGFDHVDECPHL---CTLAYDYLRKNK 57
>01_06_1046 + 34087867-34089402
Length = 511
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 182 RDEMSYFFHSVHILFFLLLGRKFDIVKNLAPVEYRAGVQGRS 57
R SY F+ + F++ +F+IVK L P+ +AG+ GR+
Sbjct: 136 RKAASYEFNKRSLRNFVVDTVRFEIVKRLLPLLEQAGLDGRT 177
>09_02_0430 - 9313768-9314259,9314347-9315299,9316875-9317022
Length = 530
Score = 28.3 bits (60), Expect = 7.2
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 15/140 (10%)
Frame = -2
Query: 769 VSGVIVNRVGKKPLLIAAGV------ITTAITLSVQWANSK--------AAIVSLFAIDT 632
VS V+V+R+G++ L I AG+ + A+ L++++ + + +V++
Sbjct: 342 VSMVVVDRLGRRFLFIEAGIQMISSMVVVAVILALKFGHGEELSKGVGTVLVVAICLFVV 401
Query: 631 AVGQVLLSLNQALTVELFPTTTRTLAISMIMVAGRIGTLTANVAF-PVLLDMGCGVPFFT 455
A G L + ELFP R+ S+++ T F + + GV
Sbjct: 402 AYGWSWGPLGWLVPSELFPLEMRSAGQSVVVCVNLFWTAAVAQCFLAAMCHLRWGVFILF 461
Query: 454 LTGMVMCVTAISLFLPSAKK 395
+V+ + L LP K+
Sbjct: 462 AALIVVMSIFVILLLPETKQ 481
>05_01_0486 - 4047055-4049013
Length = 652
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Frame = -2
Query: 763 GVIVNRVGKKPLLIAAGVITTAITLSVQWANSKAAIVSLFAIDTAVGQVLLSLNQ--ALT 590
G+I VG + G T+ SV W S +F I T + +L AL
Sbjct: 399 GIIAGYVGVRVWRTIKG--TSEGWKSVAWLTSCFFPGIVFVILTVLNSILWGKKSTGALP 456
Query: 589 VELFPTTTRT---LAISMIMVAGRIGTLTANVAFPV 491
+ LF T +++ + ++ G +GT A++ +PV
Sbjct: 457 ISLFFTLLALWFCISVPLTLIGGLLGTRAASIEYPV 492
>03_03_0039 - 13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/92 (22%), Positives = 36/92 (39%)
Frame = -2
Query: 733 PLLIAAGVITTAITLSVQWANSKAAIVSLFAIDTAVGQVLLSLNQALTVELFPTTTRTLA 554
P L G+ SV I+S V +L S + +E+F + +A
Sbjct: 1307 PTLALYGISVYYAAYSVGMGPVPWVIMSEVGKRNTVKLILYSYYAPVFLEIFSIEIKAIA 1366
Query: 553 ISMIMVAGRIGTLTANVAFPVLLDMGCGVPFF 458
S++ + IG+ + +F L+D FF
Sbjct: 1367 GSLVTLVSWIGSFAISYSFNFLMDWNSAGTFF 1398
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -1
Query: 503 GVPGSP*YGLRSTIFHVDRNGHVCNCDIFVPAFREEVTRLSG-VSLKWSH 357
G G G+RST+FH D C D + F E R V + WS+
Sbjct: 318 GSAGPEATGVRSTVFHPDGKTLFCGLDQSLKVFSWEPVRCHDVVDMGWSN 367
>11_01_0211 -
1660249-1660352,1660504-1660547,1660893-1660934,
1661010-1661098,1661181-1661225,1661501-1661545,
1661574-1661681,1661765-1661850,1662253-1662340,
1662884-1663084,1663491-1663566,1663652-1663701,
1663783-1663845,1663924-1663977,1664093-1664195,
1664328-1664430,1664516-1664576,1664872-1664912,
1666605-1666761
Length = 519
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = -2
Query: 763 GVIVNRVGKKPLLI----AAGVITTAITLSVQWANSKAAIVSLFAIDTAVGQVLLSLNQA 596
G+ +R+G+KP+++ A + T LS + + A L A++ +G + +A
Sbjct: 102 GIAADRIGRKPVVVFGIFAVVIFNTLFGLSFTYWMAIATRFLLGALNGLLGPI-----KA 156
Query: 595 LTVELFPTTTRTLAISMIMVAGRIGTL 515
+E+ LA+S++ A IG +
Sbjct: 157 YAIEVCRPEHEALALSLVSTAWGIGLI 183
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = -2
Query: 769 VSGVIVNRVGKKPLLIAAGVITTAITLSVQWANSKAAIVSL-FAIDTAVGQVLLSLNQAL 593
++ ++V+R+G+K L +++ A + + ++ +L F T + L
Sbjct: 377 LAALLVDRIGRKVSLGIMLLLSCAFLAPLAVHLGQGSVTTLLFCARTCIMGGFAVL-YVY 435
Query: 592 TVELFPTTTRTLAISMIMVAGRIGTLTANVAFPVLLDMGC 473
T E++P ++R + + GRIG++ + V V L C
Sbjct: 436 TPEIYPASSRNTGVGITSSFGRIGSIVSPVV-TVSLSENC 474
>07_01_0664 +
4979892-4979931,4980040-4980236,4982340-4982723,
4983499-4983549,4983659-4983741,4983818-4983917,
4984410-4984488,4984957-4985080,4985605-4985711,
4985810-4985938,4987004-4987089,4987200-4987367,
4987477-4987637,4987721-4987752,4987866-4988047,
4988386-4988465,4988885-4988950,4989060-4989349,
4990433-4990540,4991521-4991618,4991680-4991782,
4992269-4992345,4992449-4992520,4992579-4992670,
4992909-4992989,4993290-4993392,4994334-4994492,
4994696-4995085
Length = 1213
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 472 RSPYQGEP--GTPHSLLRYRSSQPPLS*K*PTF 564
+ PYQG P PH+ +Y+ +QPP + P F
Sbjct: 18 QGPYQGPPVMAPPHAQYQYQYAQPPPPPRQPGF 50
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/53 (18%), Positives = 25/53 (47%)
Frame = +2
Query: 602 IQAQQNLTHSCIDSKKRYDRCFGIGPLNA*SYGCSDHASCDQQWFLPNTVDDN 760
+ + N ++C+D + GI P+ +GC+ Q +P++ +++
Sbjct: 84 MHSDHNNANACVDDYQHTKMMAGIQPMEEVGFGCTQPFELQSQGIVPDSEEES 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,972,934
Number of Sequences: 37544
Number of extensions: 508832
Number of successful extensions: 1551
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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