Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a04
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.34 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.5  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   5.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.5  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +3

Query: 525 ILPATIIIEIANVLVVVGNNSTVKA*F---KL-NKT*PTAVSIAKSDTIAAL 668
           IL   I++ I NV+VV+GN   + A +   KL N T    VS+A +D +  L
Sbjct: 65  ILVTLIVLAIVNVMVVLGNVLVILAVYHTSKLRNVTNMFIVSLAVADLMVGL 116


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 525 ILPATIIIEIANVLVVVGNNST 590
           +LP T+I  +  V  +VGN ST
Sbjct: 53  VLPITVIYAVIFVTGLVGNVST 74


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -1

Query: 350 LIQGGYKNDQNLKTY 306
           +I+G Y +D++LKT+
Sbjct: 95  IIEGQYHDDEDLKTF 109


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 527 PPSHHYHRNSQ 559
           PP HH+H  +Q
Sbjct: 349 PPHHHHHHQTQ 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,962
Number of Sequences: 438
Number of extensions: 6521
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)