Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a03
         (849 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL833604-1|CAD91170.1|  673|Homo sapiens hypothetical protein pr...    32   3.0  
BX538101-1|CAD98016.1|  672|Homo sapiens hypothetical protein pr...    30   9.2  
BX538016-1|CAD97963.1|  673|Homo sapiens hypothetical protein pr...    30   9.2  
BC042753-1|AAH42753.1|  673|Homo sapiens zinc finger and BTB dom...    30   9.2  
AC002086-1|AAB54087.1|  672|Homo sapiens WUGSC:H_DJ525N14.1 prot...    30   9.2  

>AL833604-1|CAD91170.1|  673|Homo sapiens hypothetical protein
           protein.
          Length = 673

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
 Frame = -3

Query: 316 SRCITSAS*LDFIKLSLSDAMRQRGLKIYYDVTVI-EYTQIELLSHRTIVNVNATLASYG 140
           SR + SA+ + +    L+    QRG  ++ DVTVI EY +    +H+ I++ ++T   + 
Sbjct: 3   SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEYRKFR--AHKNILSASSTY--FH 58

Query: 139 KIIRILQRPLKLRYFKTNIFS 77
           ++  +  + ++L + +  IF+
Sbjct: 59  QLFSVAGQVVELSFIRAEIFA 79


>BX538101-1|CAD98016.1|  672|Homo sapiens hypothetical protein
           protein.
          Length = 672

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 19/80 (23%), Positives = 44/80 (55%)
 Frame = -3

Query: 316 SRCITSAS*LDFIKLSLSDAMRQRGLKIYYDVTVIEYTQIELLSHRTIVNVNATLASYGK 137
           SR + SA+ + +    L+    QRG  ++ DVTVI   + +  +H+ I++ ++T   + +
Sbjct: 3   SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDR-KFRAHKNILSASSTY--FHQ 59

Query: 136 IIRILQRPLKLRYFKTNIFS 77
           +  +  + ++L + +  IF+
Sbjct: 60  LFSVAGQVVELSFIRAEIFA 79


>BX538016-1|CAD97963.1|  673|Homo sapiens hypothetical protein
           protein.
          Length = 673

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 19/80 (23%), Positives = 44/80 (55%)
 Frame = -3

Query: 316 SRCITSAS*LDFIKLSLSDAMRQRGLKIYYDVTVIEYTQIELLSHRTIVNVNATLASYGK 137
           SR + SA+ + +    L+    QRG  ++ DVTVI   + +  +H+ I++ ++T   + +
Sbjct: 3   SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDR-KFRAHKNILSASSTY--FHQ 59

Query: 136 IIRILQRPLKLRYFKTNIFS 77
           +  +  + ++L + +  IF+
Sbjct: 60  LFSVAGQVVELSFIRAEIFA 79


>BC042753-1|AAH42753.1|  673|Homo sapiens zinc finger and BTB domain
           containing 33 protein.
          Length = 673

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 19/80 (23%), Positives = 44/80 (55%)
 Frame = -3

Query: 316 SRCITSAS*LDFIKLSLSDAMRQRGLKIYYDVTVIEYTQIELLSHRTIVNVNATLASYGK 137
           SR + SA+ + +    L+    QRG  ++ DVTVI   + +  +H+ I++ ++T   + +
Sbjct: 3   SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDR-KFRAHKNILSASSTY--FHQ 59

Query: 136 IIRILQRPLKLRYFKTNIFS 77
           +  +  + ++L + +  IF+
Sbjct: 60  LFSVAGQVVELSFIRAEIFA 79


>AC002086-1|AAB54087.1|  672|Homo sapiens WUGSC:H_DJ525N14.1
           protein.
          Length = 672

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 19/80 (23%), Positives = 44/80 (55%)
 Frame = -3

Query: 316 SRCITSAS*LDFIKLSLSDAMRQRGLKIYYDVTVIEYTQIELLSHRTIVNVNATLASYGK 137
           SR + SA+ + +    L+    QRG  ++ DVTVI   + +  +H+ I++ ++T   + +
Sbjct: 3   SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDR-KFRAHKNILSASSTY--FHQ 59

Query: 136 IIRILQRPLKLRYFKTNIFS 77
           +  +  + ++L + +  IF+
Sbjct: 60  LFSVAGQVVELSFIRAEIFA 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,353,591
Number of Sequences: 237096
Number of extensions: 1752108
Number of successful extensions: 2312
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2312
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)