Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18a03
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.2  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 737 IIYKWRRGRFFYTQHSLLQEKFD 805
           I+ K RRG  FY  H  +  +++
Sbjct: 224 IVNKDRRGELFYYMHQQIMARYN 246


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = +2

Query: 722 YKLKYIIYKWRRGRFFYTQHSLLQEKFDLTMKNEQN 829
           Y  + +IYKW   R       +   +FDL      N
Sbjct: 153 YTKRDVIYKWNSARQVAIAEDMKLSQFDLVANPTAN 188


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 478 KFNLRQIRYG*REKI*FRKSESEKIDRASRELFDRGEREKAS 603
           K N  +I     +++  +K E+  +DR   +LF+   +EK++
Sbjct: 74  KLNQLEIESDNSKEVNDKKEENFIVDRLRNDLFECENKEKSN 115


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 815 SSLNQISLVIGNAVYKRND 759
           SSL  +S  +   VYK+ND
Sbjct: 929 SSLVDVSTPVNKKVYKQND 947


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,428
Number of Sequences: 438
Number of extensions: 4563
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)