Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17p22
         (781 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha ...    31   3.5  
AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin receptor-i...    31   3.5  
AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor i...    31   3.5  
S72869-1|AAC60637.1|  585|Homo sapiens H4(D10S170) protein.            31   6.1  
BC064391-1|AAH64391.1|  474|Homo sapiens coiled-coil domain cont...    31   6.1  
BC036757-1|AAH36757.2|  474|Homo sapiens coiled-coil domain cont...    31   6.1  

>AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha 1
            protein.
          Length = 1806

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 712  PRANPGPVLFP--PSPAGDPSQTSGVVVGASGYGFVPPGSQG 593
            P+ NPGPV FP  P P G+P       VG        PG  G
Sbjct: 1304 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPG 1345


>AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin
           receptor-interacting protein splice variant b protein.
          Length = 1548

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 597 WEPGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 698
           W  GG +P P AP+ +     GS  G GG+S GP
Sbjct: 437 WRGGGPSPTPGAPSPSH---HGSAGGGGGSSQGP 467


>AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor
            interacting protein splice variant a protein.
          Length = 2161

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 597  WEPGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 698
            W  GG +P P AP+ +     GS  G GG+S GP
Sbjct: 1050 WRGGGPSPTPGAPSPSH---HGSAGGGGGSSQGP 1080


>S72869-1|AAC60637.1|  585|Homo sapiens H4(D10S170) protein.
          Length = 585

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 733 LSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKA 587
           +SA    PR    P+ + PSP+     + G+   +   GF PP S  +A
Sbjct: 340 MSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRA 388


>BC064391-1|AAH64391.1|  474|Homo sapiens coiled-coil domain
           containing 6 protein.
          Length = 474

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 733 LSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKA 587
           +SA    PR    P+ + PSP+     + G+   +   GF PP S  +A
Sbjct: 340 MSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRA 388


>BC036757-1|AAH36757.2|  474|Homo sapiens coiled-coil domain
           containing 6 protein.
          Length = 474

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 733 LSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKA 587
           +SA    PR    P+ + PSP+     + G+   +   GF PP S  +A
Sbjct: 340 MSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRA 388


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,844,013
Number of Sequences: 237096
Number of extensions: 2413691
Number of successful extensions: 9881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9838
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)