Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17p21
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.034
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   7.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect(2) = 0.034
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = +3

Query: 513 HRRVAHMTDHVSCGPKHEHENVDHDLHRH 599
           H  + H   H+   P H H +     H+H
Sbjct: 416 HHTMGHGHSHIHATPHHHHSHAATPHHQH 444



 Score = 23.4 bits (48), Expect(2) = 0.034
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 576 VDHDLHRHPHQPRT 617
           + H  H HPH P T
Sbjct: 459 IGHTPHHHPHPPET 472


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/71 (18%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = -2

Query: 698 VILTHCVTLFLTAIMLVGTLREK--PHLMRPWLVWMSVQIMIYVLMFVFWTTTNMVSHMG 525
           +++  C+TLF   ++++  +RE+    +   ++V ++V  ++  ++ + +    +V+  G
Sbjct: 193 LVIVPCLTLFGNVLVILAVVRERALQTVTNYFIVSLAVADLLVAVLVMPFAVYVLVN--G 250

Query: 524 DTSMLGYALEF 492
             S+ G+  +F
Sbjct: 251 SWSLPGFVCDF 261


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/68 (22%), Positives = 27/68 (39%)
 Frame = +3

Query: 519 RVAHMTDHVSCGPKHEHENVDHDLHRHPHQPRTHQVRFFPQSADKHDGCQEQRDAMCQND 698
           R+  +   +    K   ++V+ D  + PHQ   H     PQ+  +    Q+Q+    Q  
Sbjct: 783 RIPEVMRRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQ 842

Query: 699 SCQNAIRQ 722
             Q   +Q
Sbjct: 843 QQQQQQQQ 850


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 274 NKQLQIKNNYKKQTITTKEYSVILKLKLLDQAELY 378
           N   QIK+   K+ ++ + Y+V+ KL    + E+Y
Sbjct: 540 NATKQIKDEANKKGVSLRFYNVVYKLIDNIKKEIY 574


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 504 VSEHRRVAHMTDHVSCGPKHEHENVDHDLHRHPH 605
           V   + V      V  GPKH+H+     + ++ H
Sbjct: 524 VHSEQNVPGAVVRVFLGPKHDHQGRPISISKNQH 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,473
Number of Sequences: 438
Number of extensions: 3683
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)