Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17p20
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    26   0.35 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -1

Query: 573 LLITLTNYIGAGSHS----FDRTTSFDSIDLEELSEPTTTLQ 460
           L +TL  + G G+++      RT S    DL++L EP TT+Q
Sbjct: 254 LELTLRIHRGGGTNTDARHLFRTASSTPEDLQDLEEPLTTIQ 295


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 314 NLMLPGRLLCSPTTQAMLTSNHAAFITIVIRSTNPTP 424
           NL+L  RL  + + Q  L S+H+   + + RS   +P
Sbjct: 266 NLLLKARLNPNSSLQPSLASHHSHLSSALGRSACHSP 302


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -2

Query: 785 NAAAIRDAKRYNCLXEFKTFQILIK*PNQYPTTRYRRLLVW 663
           N   I D    +   + K FQ+ I   N   T +Y+   +W
Sbjct: 111 NLKVILDLVPNHTSDQHKWFQMSINNTNNNNTNKYKDYYIW 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,648
Number of Sequences: 438
Number of extensions: 4749
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)