Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17p14
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...   131   1e-31
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    49   9e-07
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    29   0.82 
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   3.3  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    27   3.3  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.4  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    27   4.4  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    26   5.8  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    26   7.6  

>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 811

 Score =  131 bits (317), Expect = 1e-31
 Identities = 95/295 (32%), Positives = 139/295 (47%), Gaps = 27/295 (9%)
 Frame = -3

Query: 838  GIVNXWDDPRLYTLSALRRXXXXXXXXXXXXXXXXXXXXXXXVDPALLHAAVRDHLNVTA 659
            G V+ W+DPRLYTL ALRR                       ++ A     VR  L  + 
Sbjct: 515  GYVHGWNDPRLYTLVALRRRGVPPGAILEFVSEVGVTTAVSNIEVARFENCVRKFLENSV 574

Query: 658  PRAMVVLEPLKIRIVNFPSEQPISIQVPDFPSEPERGSHSVTFDKVIYIEATDFKEEMEK 479
            PR M + +P+K+ + N        I++P  P +P  GS S    K IYI+ +DF+EE   
Sbjct: 575  PRLMFLPDPIKVTLENLDDSYREQIEIPFNPKDPSMGSRSAFLTKHIYIDRSDFREEASS 634

Query: 478  GYRRLTPTQSVGLRHAGYVIKVSKVIKDPSGKVLELECTAESTDSSEKPKAFIHWVS--- 308
             + RLT  Q VGL  A + +   +V+K+  G+ +E+    +++ SS+KPK FI WVS   
Sbjct: 635  DFFRLTLGQPVGLFRASHPVVAKRVVKNDEGEPIEIIAEYDAS-SSKKPKTFIQWVSRDK 693

Query: 307  ---EPISI-EVRLYEPLFK--------------HKNPEDPNEVPGGFLSDCRDDTLKVME 182
                P+ I E RL+  LFK                NPE    +    +     D +K   
Sbjct: 694  ESNSPVLIAETRLFNNLFKCDNPAALKEQELAAQLNPESEVVLKNSIIEPGIYDLIKSAP 753

Query: 181  -AYADSSIKGAKVYD----KFQFERIGFFSVDPDSSQ-THMVFNRTVSLKEDTGK 35
                DSS    K  +    +FQ  R+G+F +D D+ +  H+V NR VSL+ED+ K
Sbjct: 754  WPKTDSSAGVDKAENPESVRFQAMRVGYFCLDEDTKKPNHLVLNRIVSLREDSAK 808


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 716

 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 64/261 (24%), Positives = 97/261 (37%), Gaps = 4/261 (1%)
 Frame = -3

Query: 838  GIVNXWDDPRLYTLSALRRXXXXXXXXXXXXXXXXXXXXXXXVDPALLHAAVRDHLNVTA 659
            G+V  WDDPR  T+  +RR                       +D     A  +  ++  A
Sbjct: 454  GLVWGWDDPRFPTVRGVRRRGMTIEALQQYIVSQGPSKNILTLDWTSFWATNKKIIDPVA 513

Query: 658  PRAMVVL--EPLKIRIVNFPSEQPISIQVPDFPSEPERGSHSVTFDKVIYIEATDFKEEM 485
            PR   V   + +K  IVN P+  P +   P     PE G+    F   I IE  D +   
Sbjct: 514  PRHTAVESGDVVKATIVNGPA-APYAEDRPRHKKNPELGNKKSIFANEILIEQADAQS-- 570

Query: 484  EKGYRRLTPTQSVGLRHAGYVIKVSKVIKDPSGKVLELECTAESTDSSEKPKAFIHWVSE 305
                      + V L   G    V ++ +D SGKV  L+         +K +  + W+++
Sbjct: 571  ------FKQDEEVTLMDWGNAY-VREINRDASGKVTSLKLELHLDGDFKKTEKKVTWLAD 623

Query: 304  -PISIEVRLYEPLFKHKNPEDPNEVPGGFLSDCRDDTLKVMEAYADSSIKGAKVYDKFQF 128
                  V L +  F +   +D  E    +       T      +AD  IK  K  D  Q 
Sbjct: 624  TEDKTPVDLVD--FDYLITKDKLEEGENYKDFLTPQTEFHSPVFADVGIKNLKKGDIIQV 681

Query: 127  ERIGFFSVD-PDSSQTHMVFN 68
            ER G++ VD P      ++FN
Sbjct: 682  ERKGYYIVDVPFDGTQAVLFN 702


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 359 RIDGFVRET*SIYSLGLRTNINRGQAVRTTI*TQEP-RGSQRGSRWFPFRLS*RYPEGNG 183
           +I      + S+ SL  R N    Q VRT   + E  +   RG RW P R++   P+ NG
Sbjct: 301 KISNITLRSGSVVSLYNRIN---SQTVRTKYTSIEAGQFCLRGDRWVPLRINLLLPDENG 357

Query: 182 SLR 174
            L+
Sbjct: 358 KLK 360


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 285 GCTNHYLNTRTQRIPTRFQVVSFPTVVTI 199
           G  N YL T +Q+I  +++VVSFP ++ +
Sbjct: 431 GHANLYLTT-SQQIAKKYRVVSFPKLIVV 458


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 228 PGTSLGSSGFLCLNS-GSYSLTSIDIGSETQ*INALGFSDESVDSAVHSSSNTLPLGSFM 404
           P   +G++GF+  N  GS S ++++        +++ F  +SV      S   LP+ S M
Sbjct: 240 PAAKVGNNGFVGSNVLGSMSYSNVE--------DSVRFQTDSVSQMSSKSLEHLPMLSEM 291

Query: 405 TLDTLIT*PACLKPTDCVGVN 467
           TL +  +  A + P    G N
Sbjct: 292 TLSSSASFGASVSPKSTPGSN 312


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = -3

Query: 556 ERGSHSVTFDKVIYIEATDFKEEMEKGYRRLTPTQSVGLRHAGYVIKVSKVIKDPSGKVL 377
           E+ + S+T ++   I++TD K+ +E    R +  +    +   +   +   I D +GK+L
Sbjct: 103 EQLNSSLTIERSQSIQSTDSKQRVETQSHRRSKIEIFDAQDELFDRSICTTIDDSTGKLL 162

Query: 376 ELECTAEST 350
             E T   T
Sbjct: 163 NAEETPIKT 171


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -1

Query: 306 NQYQSRSGCTNHYLNTRTQRIPTRFQVVSFPTVVTI 199
           N+++S +  +++Y N     +P RFQ +S   +  +
Sbjct: 177 NRFKSSTAASDYYANQAFSLLPCRFQDISLTNITCL 212


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = -3

Query: 589 SIQVPDFPSEPERGSHSVTFDKVIYIEATDF------KEEMEKGYRRL 464
           +I+V DFP +PE     V  D     E+  F       EE E+GY+R+
Sbjct: 190 NIKVFDFPWDPEEDEDEVIEDNKRLWESVPFAVSGGVSEEDEEGYQRI 237


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = -3

Query: 322 IHWVSEPISIEVRLYEPLFKHKNPEDPNEVPGGFLSDCRDDTLK-----VMEAY 176
           +H + +PI+ E   Y PL++   P   +E P  F S  R DTL+     VMEA+
Sbjct: 141 LHVLFDPINGENTSYSPLYQIDEPYHSDE-PYAF-SFSRSDTLRSLYKQVMEAF 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,313
Number of Sequences: 5004
Number of extensions: 66999
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)