Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17p14
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0608 - 4513604-4513701,4513790-4513919,4514027-4514116,451... 161 5e-40
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 157 8e-39
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 30 2.0
08_02_1176 + 24931728-24931877,24933175-24933275,24934410-249347... 30 2.6
12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569 29 4.6
12_01_0185 + 1366715-1366882,1366985-1367039,1368563-1368753,136... 29 4.6
01_05_0194 - 19107143-19108055,19110864-19111132 29 4.6
08_02_0774 - 21047696-21048889 29 6.1
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93... 29 6.1
01_06_1220 + 35493575-35494765 29 6.1
11_02_0112 + 8447754-8447828,8448352-8448514,8448680-8448768,844... 28 8.1
>01_01_0608 - 4513604-4513701,4513790-4513919,4514027-4514116,
4514225-4514330,4514442-4514542,4514678-4514773,
4514860-4514959,4515133-4515269,4515563-4515661,
4515740-4515937,4516058-4516235,4516635-4516690,
4516781-4516933,4517248-4517340,4517422-4517523,
4517609-4517650,4517812-4517855,4518087-4518186,
4518323-4518394,4518499-4518621,4519309-4519452
Length = 753
Score = 161 bits (392), Expect = 5e-40
Identities = 101/278 (36%), Positives = 156/278 (56%), Gaps = 12/278 (4%)
Frame = -3
Query: 832 VNXWDDPRLYTLSALRRXXXXXXXXXXXXXXXXXXXXXXXVDPA-LLHAAVRDHLNVTAP 656
V+ WDDPRL TL+ LRR + L +R+ LN TA
Sbjct: 478 VDGWDDPRLLTLAGLRRRGVSSTAINSFICGIGITRSDNSLIRVDRLEYHIREELNKTAS 537
Query: 655 RAMVVLEPLKIRIVNFPSEQPISIQV---PDFPSEPERGSHSVTFDKVIYIEATDFKEEM 485
RAMVVL PLK+ I N E+ I + PD P++ + V F +++YIE TDF+ +
Sbjct: 538 RAMVVLNPLKVVITNLEDEKVIDLDGKMWPDAPADDASSYYKVPFSRIVYIEKTDFRLKD 597
Query: 484 EKGYRRLTPTQSVGLRHAGYVIKVSKVIK-DPSGKVLELECTAESTDSSEKPKAFIHWVS 308
K Y L P +S LR+A + IK ++V+ D ++E+ + + ++ KPK +HWV+
Sbjct: 598 SKDYYGLAPGKSALLRYA-FPIKCTEVVYGDNPDDIIEIRAEYDPSKTT-KPKGVLHWVA 655
Query: 307 ------EPISIEVRLYEPLFKHKNPEDPNEVPGGFLSDCRDDTLKVME-AYADSSIKGAK 149
EP+ +EVRL++ LF +NP + + +L D ++ +V++ AYA S+ A
Sbjct: 656 QPAPGVEPLKVEVRLFDKLFLSENPAELED----WLGDLNPNSKEVIKGAYAVPSLATAV 711
Query: 148 VYDKFQFERIGFFSVDPDSSQTHMVFNRTVSLKEDTGK 35
+ DKFQFER+G+F+VD DS+ ++VFNRTV+L++ GK
Sbjct: 712 LGDKFQFERLGYFAVDTDSTPENIVFNRTVTLRDSYGK 749
>05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 157 bits (382), Expect = 8e-39
Identities = 101/278 (36%), Positives = 152/278 (54%), Gaps = 12/278 (4%)
Frame = -3
Query: 832 VNXWDDPRLYTLSALRRXXXXXXXXXXXXXXXXXXXXXXXVDPA-LLHAAVRDHLNVTAP 656
V+ WDDPRL TL+ LRR + L +R+ LN AP
Sbjct: 521 VDGWDDPRLLTLAGLRRRGVSSTAINSFIRGMGITRSDNSLIRLERLEYHIREELNKVAP 580
Query: 655 RAMVVLEPLKIRIVNFPSEQPISIQV---PDFPSEPERGSHSVTFDKVIYIEATDFKEEM 485
RAMVVL PLK+ I N I + PD P + + V F + +YIE +DF+ +
Sbjct: 581 RAMVVLHPLKVVINNLDYGTIIDLDAKKWPDAPGDDASAYYKVPFSRTVYIEQSDFRVKD 640
Query: 484 EKGYRRLTPTQSVGLRHAGYVIKVSKVIK-DPSGKVLELECTAESTDSSEKPKAFIHWVS 308
K Y L P ++V LR+A + IK ++VI D S ++E+ + + ++ KPK +HWV+
Sbjct: 641 SKDYYGLAPGKTVLLRYA-FPIKCTEVIYGDNSDNIIEIRAEYDPSKAT-KPKGVLHWVA 698
Query: 307 EP------ISIEVRLYEPLFKHKNPEDPNEVPGGFLSDCRDDTLKVME-AYADSSIKGAK 149
EP + +E+RL+E LF +NP + + +L D + +V++ AYA S+ A
Sbjct: 699 EPSPGVNPLKVEIRLFEKLFLSENPVELED----WLGDLNPRSKEVIKGAYAVPSLATAA 754
Query: 148 VYDKFQFERIGFFSVDPDSSQTHMVFNRTVSLKEDTGK 35
+ DKFQFER+G+F+VD DS+ +VFNRTV+L++ GK
Sbjct: 755 LGDKFQFERLGYFAVDSDSTAEELVFNRTVTLRDSYGK 792
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/55 (40%), Positives = 25/55 (45%)
Frame = +3
Query: 249 SGFLCLNSGSYSLTSIDIGSETQ*INALGFSDESVDSAVHSSSNTLPLGSFMTLD 413
S + NS S+TS+ GSET N V S VHS S LGS LD
Sbjct: 1082 SSWAASNSVKDSVTSVSAGSETTVTNR-----PHVSSGVHSQSEESQLGSVKCLD 1131
>08_02_1176 +
24931728-24931877,24933175-24933275,24934410-24934788,
24935509-24936354,24936555-24936642,24936947-24937039,
24937221-24937318,24937364-24937470,24938266-24938353,
24938748-24939005
Length = 735
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Frame = -3
Query: 331 KAFIHWVSEPISIEVRLY----EPL-FKHKNPEDPNEVPG 227
+AFI W+ + +S+ + LY E L +K+ E PNE+PG
Sbjct: 79 RAFISWLWDHLSVNLHLYVQTQEQLQVDNKDDEAPNELPG 118
>12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569
Length = 411
Score = 29.1 bits (62), Expect = 4.6
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = -3
Query: 331 KAFIHWVSEPISIEVRLYEPLFKHKNPEDPNEVPGGFLSDCRDDTLKVMEAYADSSIKGA 152
K F+H + + I V+ YE + + + + E ++ R + ++E A +
Sbjct: 93 KLFVH-PQDSVWIFVKKYEHIIETRLDREDREGYRAETTEPRMYSRSLIEKQASQFYTTS 151
Query: 151 KVYDKFQFERIGFFSVDPDSSQ--THMVFNRTVSLKEDTGK 35
DKFQ+E +D + +Q ++++N S +E TGK
Sbjct: 152 MFADKFQYEIYEATGLDAEKTQEVPNIMYNVMPSDRERTGK 192
>12_01_0185 +
1366715-1366882,1366985-1367039,1368563-1368753,
1369882-1369951,1370027-1370172,1370612-1370762,
1371228-1371346,1371482-1371553,1372546-1372649,
1373093-1373285,1373501-1373644,1373706-1373792,
1373967-1374065
Length = 532
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = -3
Query: 631 LKIRIVNF-PSEQPISIQVPDFPSEPERGSHSVT-FDKVIYIEATDFKE---EMEKGYRR 467
L+++IVNF P+ ++I + + +VT ++ F E +E+G
Sbjct: 420 LRVKIVNFGPNAVNLTISSSGLQAGVDTAKSTVTVLTSSNLLDENSFSEPNKNLEEGNFS 479
Query: 466 LTPTQSVGLRHAGYVIKVSKVI 401
+T SV +RHAG + ++ +V+
Sbjct: 480 ITKIWSVTIRHAGGMPRICQVV 501
>01_05_0194 - 19107143-19108055,19110864-19111132
Length = 393
Score = 29.1 bits (62), Expect = 4.6
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 691 AAVRDHLNVTAPRAMVVLEPLKIRIVNFPSEQPISIQVPDFPSEPE--RGSHSVTFDKVI 518
A+ D NV+ + + + S I+I PDFPS+ E GS VT K
Sbjct: 235 ASATDQENVSQKIVVTITSEKGMHETEPVSANKIAICQPDFPSKAEFPVGSSFVTPRKNK 294
Query: 517 YIEATDFKEEME 482
++ TD K+ E
Sbjct: 295 LVDVTDHKDSAE 306
>08_02_0774 - 21047696-21048889
Length = 397
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 334 PKAFIHWVSEPISIEVRLYEPLFKHKNPEDPNEVPG 227
P+AFIH +S P++ V + + K K +P ++ G
Sbjct: 184 PEAFIHIISNPVNSTVPIAAEVLKQKGVYNPKKLFG 219
>04_01_0085 -
932461-932464,932656-933002,933387-935041,935084-935882,
936693-936707
Length = 939
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 203 RYPEGNGSLRRLFNQGCQSLRQV 135
R GNGSL+ LF GC+ LR +
Sbjct: 617 RAMRGNGSLKELFLLGCKELRAI 639
>01_06_1220 + 35493575-35494765
Length = 396
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 334 PKAFIHWVSEPISIEVRLYEPLFKHKNPEDPNEVPG 227
P+AFIH +S P++ V + + K K +P ++ G
Sbjct: 184 PEAFIHIISNPVNSTVPIAAEVLKQKGVYNPKKLFG 219
>11_02_0112 +
8447754-8447828,8448352-8448514,8448680-8448768,
8448860-8449123,8449635-8449907
Length = 287
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 570 KSGTCIDIGCSLGKFTILIFNGSSTTIALGAV 665
+S T +D+GCS G T+L + TTI A+
Sbjct: 50 QSMTIVDLGCSFGANTLLFVSDVITTICENAM 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,083,283
Number of Sequences: 37544
Number of extensions: 435490
Number of successful extensions: 1161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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