Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17p14
         (840 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    25   2.2  
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    25   2.2  
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    25   2.2  
AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine...    25   3.8  
AF071163-1|AAC79999.1|  218|Anopheles gambiae glutathione S-tran...    25   3.8  
AF071160-4|AAC79992.1|  218|Anopheles gambiae glutathione S-tran...    25   3.8  
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          24   5.0  

>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 670 NVTAPRAMVVLEPLKIRIVNF 608
           NVT PR+ ++LE    R+ +F
Sbjct: 645 NVTCPRSEIILETFNFRVEDF 665


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 670 NVTAPRAMVVLEPLKIRIVNF 608
           NVT PR+ ++LE    R+ +F
Sbjct: 645 NVTCPRSEIILETFNFRVEDF 665


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 670 NVTAPRAMVVLEPLKIRIVNF 608
           NVT PR+ ++LE    R+ +F
Sbjct: 623 NVTCPRSEIILETFNFRVEDF 643


>AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine
           protease protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 652 AMVVLEPLKIRIVNFPSEQPI--SIQVPDFPSEPERGSHSVTFDKVIYIEATD 500
           A+ VL P+         ++P+  SI++ D P+EP  G   +  + V Y +  D
Sbjct: 14  ALAVLSPVAYGAPMDTDDRPVWDSIRLCDIPNEPNPGQCMLPAECVAYGKIND 66


>AF071163-1|AAC79999.1|  218|Anopheles gambiae glutathione
           S-transferase D1-3 protein.
          Length = 218

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 389 ARIFYDFRYLNYVAGVPQTDRLCGCQSAVALLHFFLEVRRF 511
           A  +Y   +   VAG P  DRL   + A+  L+ FLE  RF
Sbjct: 115 AEYYYPQIFGKKVAGDP--DRLRSMEQALEFLNTFLEGERF 153


>AF071160-4|AAC79992.1|  218|Anopheles gambiae glutathione
           S-transferase protein.
          Length = 218

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 389 ARIFYDFRYLNYVAGVPQTDRLCGCQSAVALLHFFLEVRRF 511
           A  +Y   +   VAG P  DRL   + A+  L+ FLE  RF
Sbjct: 115 AEYYYPQIFGKKVAGDP--DRLRSMEQALEFLNTFLEGERF 153


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 356 IDGFVRET*SI-YSLGLRTNINRGQAVRTT 270
           +DGF   + S  + LGL +N+NR + V  T
Sbjct: 338 VDGFTDPSNSERFCLGLLSNVNRNEVVEQT 367


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 785,081
Number of Sequences: 2352
Number of extensions: 15862
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88891965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)