Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17p14
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-3|CAB08998.1|  786|Caenorhabditis elegans Hypothetical pr...   271   5e-73
Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a ...    29   4.1  
AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like fact...    29   4.1  
AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like fact...    29   4.1  

>Z95559-3|CAB08998.1|  786|Caenorhabditis elegans Hypothetical protein
            Y41E3.4 protein.
          Length = 786

 Score =  271 bits (664), Expect = 5e-73
 Identities = 138/266 (51%), Positives = 176/266 (66%), Gaps = 4/266 (1%)
 Frame = -3

Query: 832  VNXWDDPRLYTLSALRRXXXXXXXXXXXXXXXXXXXXXXXVDPALLHAAVRDHLNVTAPR 653
            VN WDDPRL+TL+ALRR                       +DP +L A VRD+LN+ APR
Sbjct: 514  VNDWDDPRLFTLTALRRRGIPSEAINRFVAKLGLTMSQMVIDPHVLDATVRDYLNIHAPR 573

Query: 652  AMVVLEPLKIRIVNFPS-EQPISIQVPDFPSEP-ERGSHSVTFDKVIYIEATDFK-EEME 482
             M VLE LK+ I NF     P S+ VPDFPS+P +   HSV+ D+ I+IE +D+K ++ +
Sbjct: 574  TMAVLEGLKLTIENFSELNLPSSVDVPDFPSDPTDPRKHSVSVDREIFIEKSDYKPDDSD 633

Query: 481  KGYRRLTPTQSVGLRHAGYVIKVSKVIKDPSGKVLELECTAESTDSSEKPKAFIHWVSEP 302
            K +RRLTP Q+VGL+H G V++  K +KD  G V E+   AE     +KPKAFIHWV++P
Sbjct: 634  KSFRRLTPKQAVGLKHIGLVLRFVKEVKDAEGHVTEVVVKAEKLSEKDKPKAFIHWVAKP 693

Query: 301  ISIEVRLYEPLFKHKNPEDPNEVPGGFLSDCRDDTLKVM-EAYADSSIKGAKVYDKFQFE 125
            +S EVRLY+ LFK KNPED   VPGGFLSD   D+L V+  A  D SI  +KVYD+FQFE
Sbjct: 694  VSCEVRLYDRLFKSKNPEDAQLVPGGFLSDINPDSLTVVYNALIDQSIAKSKVYDRFQFE 753

Query: 124  RIGFFSVDPDSSQTHMVFNRTVSLKE 47
            RIGFF VD DS+ + +VFNRTV LK+
Sbjct: 754  RIGFFCVDRDSTSSTLVFNRTVMLKD 779


>Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical
           protein F39H11.2 protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 694 HAAVRDHLNVTAPRAMVVLEPLKIRIVNFPSEQPISIQVPDFPSE 560
           H A + H  +  PR M +  PL+      P   P+ I+VPD P E
Sbjct: 206 HHAQQPHPQIYVPRDMNLAVPLR---EPSPEPIPVKIEVPDVPPE 247


>U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a
           regulatory a subunitprotein 1 protein.
          Length = 590

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 283 LYEPLFKHKNPEDPNEVPGGFLSDCRDDTLKVMEAYADSSIKGAKVYDK 137
           L+  ++   +P   +E+   F + CRDDT  V  A A    + AKV++K
Sbjct: 152 LFSVVYPRVSPAIKSELKSMFRTLCRDDTPMVRRAAAAKLGEFAKVFEK 200


>AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 454

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 694 HAAVRDHLNVTAPRAMVVLEPLKIRIVNFPSEQPISIQVPDFPSE 560
           H A + H  +  PR M +  PL+      P   P+ I+VPD P E
Sbjct: 206 HHAQQPHPQIYVPRDMNLAVPLR---EPSPEPIPVKIEVPDVPPE 247


>AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 694 HAAVRDHLNVTAPRAMVVLEPLKIRIVNFPSEQPISIQVPDFPSE 560
           H A + H  +  PR M +  PL+      P   P+ I+VPD P E
Sbjct: 206 HHAQQPHPQIYVPRDMNLAVPLR---EPSPEPIPVKIEVPDVPPE 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,089,161
Number of Sequences: 27780
Number of extensions: 371278
Number of successful extensions: 1115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)