Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17p08
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom...    79   6e-16
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   7.5  

>SPBC32F12.03c |gpx1||glutathione peroxidase
           Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 158

 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
 Frame = -1

Query: 829 FPCNQLLVQEPGNPEEIVCFASERK-VKFDLFEKVDVNGDNASPLWKYLKHKQGGTLGSF 653
           FPCNQ   QEPG+ EEI  F  +   V F +  K++VNGDN  P++++LK ++       
Sbjct: 62  FPCNQFGNQEPGSDEEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQLGLER 121

Query: 652 IKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLE 551
           IKWNF KF++N+ G  +ER+   + P  L   +E
Sbjct: 122 IKWNFEKFLVNRQGQVIERYSSISKPEHLENDIE 155


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 395 NYIMLFYKYPFNDTHTDFVFRLQFAIKPITKLFLIKGYL 511
           +Y+   Y+ PF+   T  +  L+  +  + + FLIK YL
Sbjct: 812 SYLNSSYQTPFHAGETHLISSLRSKVDLLDRKFLIKEYL 850


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,857
Number of Sequences: 5004
Number of extensions: 70170
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)