Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17p01
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    28   0.12 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   7.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   7.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
 Frame = -2

Query: 735 LQMDITYTKSIIRLRHYIQDLDERIDLLINITDYVAEKNLSNFEKI--RRTLSVNFYGYI 562
           LQ D++    I+++  +++     ID+LIN      +  L N E +  ++   +N  G  
Sbjct: 61  LQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLT 120

Query: 561 NFGKLVYPLLNE----NARVVNVSGPAGL 487
              + V  L+ +    N  +VN++  +GL
Sbjct: 121 CMIQEVLKLMKKKGINNGIIVNINDASGL 149


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 460 KKENQRSHIDRR*TGRFNPRIRTRRKKGSRED*RLG 353
           KK+N+    D     +  P++ T  KKGS  D  +G
Sbjct: 213 KKKNKEDEDDGATPRKAPPQLSTTDKKGSAIDLDIG 248


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 250 RVYTVDYNPFISPFP 294
           R  ++D NP I+P+P
Sbjct: 93  REVSIDGNPLIAPYP 107


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 478 NRKRRYKKENQRSHIDRR 425
           +R RRY K    S +DRR
Sbjct: 19  SRSRRYSKRFSSSIVDRR 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,928
Number of Sequences: 438
Number of extensions: 4558
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)